Browse Element(s) Details


Os.10240.1.S1_at

Description gb:AK070251.1
DB_XREF= gi:32980275
TID=Os.10240.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.17 (P0471B04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041E09, full insert sequence.
FL= gb:AK070438.1 gb:AK070251.1 gb:AK105779.1 gb:AK104297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6568011/11Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed
LOC_Os01g65740OsAffx.9622.1.S1_at11/111+38491386..38493994uncharacterized plant-specific domain TIGR01615 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006725biological_processaromatic compound metabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10240.1.S1_at--483--4751Chr01:38466369..38466393 (25 bp)
GCTGATCCACCGCAGCTGGAGCAAC
LOC_Os01g65680
Os.10240.1.S1_at--523--2551Chr01:38466302..38466326 (25 bp)
AACTGAAAACCGGTCGACGCGATGC
LOC_Os01g65680
Os.10240.1.S1_at--285--4991Chr01:38466264..38466288 (25 bp)
GCATGCAACCACGTGTTTGCTTGTA
LOC_Os01g65680
Os.10240.1.S1_at--563--9051Chr01:38466247..38466271 (25 bp)
TGCTTGTAACATATTTGACTCGAAC
LOC_Os01g65680
Os.10240.1.S1_at--653--8911Chr01:38466232..38466256 (25 bp)
TGACTCGAACAATAATCCCCGTGGG
LOC_Os01g65680
Os.10240.1.S1_at--231--2451Chr01:38466222..38466246 (25 bp)
AATAATCCCCGTGGGCTCACGTAGA
LOC_Os01g65680
Os.10240.1.S1_at--481--3751Chr01:38466207..38466231 (25 bp)
CTCACGTAGACGTGTGTGCCGTGTT
LOC_Os01g65680
Os.10240.1.S1_at--510--7291Chr01:38466192..38466216 (25 bp)
GTGCCGTGTTCGTGTTTGTATTTCT
LOC_Os01g65680
Os.10240.1.S1_at--477--9411Chr01:38466183..38466207 (25 bp)
TCGTGTTTGTATTTCTCGGAGCCGT
LOC_Os01g65680
Os.10240.1.S1_at--523--3991Chr01:38466092..38466116 (25 bp)
CGTGGCACAGCCTTATGGCGTTAAT
LOC_Os01g65680
Os.10240.1.S1_at--888--3371Chr01:38466085..38466109 (25 bp)
CAGCCTTATGGCGTTAATTGGTGTT
LOC_Os01g65680
Target Sequence 
GCTGATCCACCGCAGCTGGAGCAACGCCTCGCTCTCCTACGCCTCGTACCGCTTCACCACCGCCAAGAACTGAAAACCGG
TCGACGCGATGCACGCCGGCTCGCCGCATGCAACCACGTGTTTGCTTGTAACATATTTGACTCGAACAATAATCCCCGTG
GGCTCACGTAGACGTGTGTGCCGTGTTCGTGTTTGTATTTCTCGGAGCCGTGGCTTGGGGTTGTTTACTTGTTTTTTTTT
TTTTTGTAAGATTGGGTTGGGCCTGGGCCTGGGCCTGGGCCGTGGCACAGCCTTATGGCGTTAATTGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis