Browse Element(s) Details


Os.17259.1.S1_at

Description gb:AK073884.1
DB_XREF= gi:32983907
TID=Os.17259.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amino acid permease 6 (P0471B04.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073B17, full insert sequence.
FL= gb:AK073884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6566011/11amino acid permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17259.1.S1_at--740--1551Chr01:38445320..38445344 (25 bp)
AGCTTCTGGCCACTGACTGTTTACT
LOC_Os01g65660
Os.17259.1.S1_at--452--8031Chr01:38445250..38445274 (25 bp)
GGAGGTGGTATCTCCTGCAAGGCCT
LOC_Os01g65660
Os.17259.1.S1_at--798--2951Chr01:38445232..38445256 (25 bp)
AAGGCCTGAGCATGGTGTGCTTGAT
LOC_Os01g65660
Os.17259.1.S1_at--433--8651Chr01:38445193..38445217 (25 bp)
TGGGCATTGGCTCTGTCACTGACAT
LOC_Os01g65660
Os.17259.1.S1_at--438--6491Chr01:38445164..38445188 (25 bp)
GATAGCCTGAAGGTTGCAACCCCTT
LOC_Os01g65660
Os.17259.1.S1_at--469--1011Chr01:38445055..38445079 (25 bp)
AGGATTCTGGACTCTGATTCTGTGT
LOC_Os01g65660
Os.17259.1.S1_at--695--7451Chr01:38445034..38445058 (25 bp)
GTGTCTCTGTGTATCAATTTTCTCG
LOC_Os01g65660
Os.17259.1.S1_at--867--531Chr01:38445006..38445030 (25 bp)
ATCCGGCCGGTTCCTGAAAGATTTG
LOC_Os01g65660
Os.17259.1.S1_at--692--10871Chr01:38444984..38445008 (25 bp)
TTGGAACTCTGAACTTTGCTGGATC
LOC_Os01g65660
Os.17259.1.S1_at--424--5191Chr01:38444867..38444891 (25 bp)
GAATAACCTGTACAACGGCCTTTGC
LOC_Os01g65660
Os.17259.1.S1_at--668--10051Chr01:38444838..38444862 (25 bp)
TAGTATTTCCTGTTCCTGTCTAAAA
LOC_Os01g65660
Target Sequence 
AGCTTCTGGCCACTGACTGTTTACTTCCCCATCAGCATGCACATTGCGCAGGAGAAGATCACCAGGGGAGGGAGGTGGTA
TCTCCTGCAAGGCCTGAGCATGGTGTGCTTGATGATCTCGGTGGCAGTGGGCATTGGCTCTGTCACTGACATTGTTGATA
GCCTGAAGGTTGCAACCCCTTTCAAAACTGTCAGCTAAAAGCAGTGCTGCAGTATATTGTAGAACAGTGACAAACAGAAA
ACAGCTACGAGTTGTACAACAATGTAGGATTCTGGACTCTGATTCTGTGTCTCTGTGTATCAATTTTCTCGGATATCCGG
CCGGTTCCTGAAAGATTTGGAACTCTGAACTTTGCTGGATCAGCTATATTGACACATTAGGTTGTTCCTATCTGATTAAA
CAGGTCGGAACTTGGAACATAGCAGAAAGAGGTTGGAATATGTAGTAGTATTGGAATAACCTGTACAACGGCCTTTGCCT
TTTAGTATTTCCTGTTCCTGTCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis