Browse Element(s) Details


Os.11443.1.S1_a_at

Description gb:AK104289.1
DB_XREF= gi:32989498
TID=Os.11443.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.10 (P0471B04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E07, full insert sequence.
FL= gb:AK060162.1 gb:AK104289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6563011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11443.1.S1_a_at--372--9351Chr01:38429008..38429032 (25 bp)
TCGACGTCGCTCAGGGACTTCGGCA
LOC_Os01g65630
Os.11443.1.S1_a_at--867--4111Chr01:38429001..38429025 (25 bp)
CGCTCAGGGACTTCGGCACGTCGAT
LOC_Os01g65630
Os.11443.1.S1_a_at--39--4711Chr01:38428697..38428721 (25 bp)
GCGGCGGACCTGTCGGTGTTGATGC
LOC_Os01g65630
Os.11443.1.S1_a_at--888--2091Chr01:38428561..38428585 (25 bp)
ACATGCCGCCATGATCGAGATCTCG
LOC_Os01g65630
Os.11443.1.S1_a_at--554--9371Chr01:38428547..38428571 (25 bp)
TCGAGATCTCGCGTACAATGTTGCA
LOC_Os01g65630
Os.11443.1.S1_a_at--848--3791Chr01:38428540..38428564 (25 bp)
CTCGCGTACAATGTTGCAGTGGAAC
LOC_Os01g65630
Os.11443.1.S1_a_at--522--5511Chr01:38428519..38428543 (25 bp)
GAACAACATGTTAGAGACACACGCT
LOC_Os01g65630
Os.11443.1.S1_a_at--914--6771Chr01:38428510..38428534 (25 bp)
GTTAGAGACACACGCTGTCAAACCA
LOC_Os01g65630
Os.11443.1.S1_a_at--1008--511Chr01:38428469..38428493 (25 bp)
ATCGATGGATCGAATCCTGTTGCTG
LOC_Os01g65630
Os.11443.1.S1_a_at--399--6391Chr01:38428462..38428486 (25 bp)
GATCGAATCCTGTTGCTGATTGAAT
LOC_Os01g65630
Os.11443.1.S1_a_at--998--4711Chr01:38428436..38428460 (25 bp)
GCTGTATAGCGGAGACGCTGTAAAT
LOC_Os01g65630
Target Sequence 
TCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCAT
GTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCG
CGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGAC
CTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAG
GGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAAT
GTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTT
GCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11443.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis