Browse Element(s) Details


Os.12640.1.S1_at

Description gb:AK069324.1
DB_XREF= gi:32979348
TID=Os.12640.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase (P0471B04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012G17, full insert sequence.
FL= gb:AK069324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6565011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12640.1.S1_at--606--5071Chr01:38444234..38444258 (25 bp)
GCAGCCCTTCAGACCAACAGTTTGA
LOC_Os01g65650
Os.12640.1.S1_at--716--5451Chr01:38444263..38444287 (25 bp)
GAACTGGACATTGTCTCCTGGGTTT
LOC_Os01g65650
Os.12640.1.S1_at--236--10331Chr01:38444285..38444309 (25 bp)
TTTCATCCCATTTGGCCAACCAGAA
LOC_Os01g65650
Os.12640.1.S1_at--670--1471Chr01:38444306..38444330 (25 bp)
AGAATCCTGCAGCTGTTCTTGATCC
LOC_Os01g65650
Os.12640.1.S1_at--153--6371Chr01:38444326..38444350 (25 bp)
GATCCAAAGGTTAGCAGCCATGCAT
LOC_Os01g65650
Os.12640.1.S1_at--1137--1011Chr01:38444366..38444390 (25 bp)
AGGTCTTGAACATTGCCATCCTTTG
LOC_Os01g65650
Os.12640.1.S1_at--883--7351Chr01:38444434..38444458 (25 bp)
GTGAAAATGCTCATCGACATCGACT
LOC_Os01g65650
Os.12640.1.S1_at--228--531Chr01:38444452..38444476 (25 bp)
ATCGACTCTATCTCAGCAAACGGGA
LOC_Os01g65650
Os.12640.1.S1_at--616--3431Chr01:38444509..38444533 (25 bp)
CAGATGCCCCGTTTCTTTGTAAGAA
LOC_Os01g65650
Os.12640.1.S1_at--260--6951Chr01:38444564..38444588 (25 bp)
GTAGCAACAGTCTGGGTGCTGCCGT
LOC_Os01g65650
Os.12640.1.S1_at--235--9031Chr01:38444683..38444707 (25 bp)
TGCACATATGTACAAGCTACCCTGT
LOC_Os01g65650
Target Sequence 
GCAGCCCTTCAGACCAACAGTTTGACNGGTGAACTGGACATTGTCTCCTGGGTTTCATCCCATTTGGCCAACCAGAATCC
TGCAGCTGTTCTTGATCCAAAGGTTAGCAGCCATGCATCAGAGGACATGACAAAGGTCTTGAACATTGCCATCCTTTGCA
CTGTTCAACTGCCTTCTGAACGGCCAACCATGAGAGAAGTCGTGAAAATGCTCATCGACATCGACTCTATCTCAGCAAAC
GGGAAGGCAAAGAACAAGAATGATAAGAAGTAAGAACAGATGCCCCGTTTCTTTGTAAGAAACTGCTGCCAGAAAGATCA
AAAGGCACCCAGTAGCAACAGTCTGGGTGCTGCCGTGCTGCCAATTAGGACCTTAATTAGAATGCCTGACTAGTGAATAG
TAACTAGTAGGCTGGTAATAAACTGAGGTTTTAGCAGCCTCTGAAAAGCTTGCACATATGTACAAGCTACCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis