Browse Element(s) Details


OsAffx.16663.1.S1_s_at

Description gb:NM_190133.1
DB_XREF= gi:34907349
GEN=P0471B04.9
TID=OsAffx.16663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0471B04.9 (P0471B04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4704011/11hypothetical protein
LOC_Os01g6561011/11hypothetical protein
LOC_Os07g408808/11hypothetical protein
LOC_Os04g428304/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16663.1.S1_s_at--225--997Chr07:24478187..24478211 (25 bp)
AGGAGTTCGGTGACTCGCTGTGCCC
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--152--6077Chr07:24478189..24478213 (25 bp)
GAGTTCGGTGACTCGCTGTGCCCGC
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--501--1237Chr07:24478190..24478214 (25 bp)
AGTTCGGTGACTCGCTGTGCCCGCC
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--976--9436Chr06:3563071..3563099 (25 bp)
TCGGTGACTCGCTGTGCCCGCCGAT
NONE
OsAffx.16663.1.S1_s_at--1153--8554Chr02:28701157..28701181 (25 bp)
TGTGCCCGCCGATCCCTTGCACCGG
LOC_Os02g47040
OsAffx.16663.1.S1_s_at--1054--10734Chr07:24478226..24478245 (20 bp)
TTGCACCGGCGAACTCTTGACCCTG
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--1156--8374Chr07:24478228..24478252 (25 bp)
GGCGAACTCTTGACCCTGCCGGATA
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--34--4594Chr07:24478229..24478253 (25 bp)
GCGAACTCTTGACCCTGCCGGATAG
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--193--5474Chr07:24478231..24478255 (25 bp)
GAACTCTTGACCCTGCCGGATAGCA
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--1052--2494Chr07:24478232..24478256 (25 bp)
AACTCTTGACCCTGCCGGATAGCAA
LOC_Os07g40880
OsAffx.16663.1.S1_s_at--372--10753Chr02:28701189..28701213 (25 bp)
TTGACCCTGCCGGATAGCAACTTCG
LOC_Os02g47040
Target Sequence 
AGGAGTTCGGTGACTCGCTGTGCCCGCCGATCCCTTGCACCGGCGAACTCTTGACCCTGCCGGATAGCAACTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16663.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis