Browse Element(s) Details


Os.25469.1.S1_at

Description gb:AK060614.1
DB_XREF= gi:32970632
TID=Os.25469.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G09, full insert sequence.
FL= gb:AK060614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4703011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25469.1.S1_at--707--3391Chr02:28699353..28699377 (25 bp)
CAGCTGCTTGTGTAGACGTGGAGAA
LOC_Os02g47030
Os.25469.1.S1_at--53--2631Chr02:28699312..28699336 (25 bp)
AACCGAATTTACATTGCTGCTCCTG
LOC_Os02g47030
Os.25469.1.S1_at--77--9271Chr02:28699292..28699316 (25 bp)
TCCTGGGTGCCGTGACTGGTATGCA
LOC_Os02g47030
Os.25469.1.S1_at--1113--1071Chr02:28699232..28699256 (25 bp)
AGGGCTTGGACCATTGTCCATTCAA
LOC_Os02g47030
Os.25469.1.S1_at--1125--2051Chr02:28699197..28699221 (25 bp)
ACTTGCCATGGCCTTCACAGATATG
LOC_Os02g47030
Os.25469.1.S1_at--1130--6531Chr02:28699172..28699196 (25 bp)
GATTTATCCACGTCTTCTCTTTTGA
LOC_Os02g47030
Os.25469.1.S1_at--774--2051Chr02:28699062..28699086 (25 bp)
ACTTCCGTAGCATGTTGTGCCAACA
LOC_Os02g47030
Os.25469.1.S1_at--510--6111Chr02:28699033..28699057 (25 bp)
GAGTGTTTTTCTAGCAATTCCCTTT
LOC_Os02g47030
Os.25469.1.S1_at--1116--10791Chr02:28698948..28698972 (25 bp)
TTGTAATTGTCGTCATGACTTCCGG
LOC_Os02g47030
Os.25469.1.S1_at--42--8591Chr02:28698913..28698937 (25 bp)
TGGTAGGCCGGTACATGCTGATCAC
LOC_Os02g47030
Os.25469.1.S1_at--725--6851Chr02:28698873..28698897 (25 bp)
GTTTGTAGGCTTCTCTTTTAGGCTT
LOC_Os02g47030
Target Sequence 
CAGCTGCTTGTGTAGACGTGGAGAACTGTGGCGTGGAGGCGAACCGAATTTACATTGCTGCTCCTGGGTGCCGTGACTGG
TATGCATGGCGGCCTGGGCGTGAGGTGCCTCTCGGTGGTCAAGGGCTTGGACCATTGTCCATTCAAGCAATGAACCACTT
GCCATGGCCTTCACAGATATGGATTTATCCACGTCTTCTCTTTTGATGATGCATGGTAACTAGTGAGACAAGTGAAGAAA
CCTTATCTATGATCAGTTGTTTTGCTGTAAATCTATTACTGTGGATATTTTACTTCCGTAGCATGTTGTGCCAACATAAT
GAGTGTTTTTCTAGCAATTCCCTTTCAGCCAACACNTGTCATAGTAAGTCACATTTTTGTATCATATGGAAACACCAAGT
ACNGATTGTAATTGTCGTCATGACTTCCGGNGGTACCACCTGGTAGGCCGGTACATGCTGATCACCAANGTTTTGTATGA
GTTTGTAGGCTTCTCTTTTAGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis