Browse Element(s) Details


Os.53524.1.S1_at

Description gb:AK073100.1
DB_XREF= gi:32983123
TID=Os.53524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033016K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033016K09, full insert sequence.
FL= gb:AK073100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4706011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed
LOC_Os02g47070OsAffx.12533.1.S1_at11/112+28732333..28733209hypothetical protein
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009615biological_processresponse to virus
GO:0009626biological_processhypersensitive response
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53524.1.S1_at--1046--7071Chr02:28724532..28724556 (25 bp)
GTCAAGGCGGAACCCAACGATCAAT
LOC_Os02g47060
Os.53524.1.S1_at--205--5371Chr02:28724636..28724660 (25 bp)
GAAGACGACGCAGAAATCCATGGAG
LOC_Os02g47060
Os.53524.1.S1_at--605--8071Chr02:28724699..28724723 (25 bp)
GGAGCACAGTGATCTCATGCAGCAG
LOC_Os02g47060
Os.53524.1.S1_at--357--3531Chr02:28724714..28724738 (25 bp)
CATGCAGCAGATGTTCAGCCAGAGC
LOC_Os02g47060
Os.53524.1.S1_at--1042--3371Chr02:28724729..28724753 (25 bp)
CAGCCAGAGCTACCGGCCGATGATA
LOC_Os02g47060
Os.53524.1.S1_at--627--10571Chr02:28724835..28724859 (25 bp)
TTCTCCAAGGAGTACATGGCGACCA
LOC_Os02g47060
Os.53524.1.S1_at--1030--131Chr02:28724860..28724884 (25 bp)
ATTACAAGCCAGCAGGTGACCCAGC
LOC_Os02g47060
Os.53524.1.S1_at--148--2211Chr02:28724908..28724932 (25 bp)
ACAAGGGCTTGGATCCAGCGTACAT
LOC_Os02g47060
Os.53524.1.S1_at--337--4651Chr02:28724925..28724949 (25 bp)
GCGTACATGCTGGATTGGTCTTCTA
LOC_Os02g47060
Os.53524.1.S1_at--738--7811Chr02:28724941..28724965 (25 bp)
GGTCTTCTACCACTGTTGTTACTAG
LOC_Os02g47060
Os.53524.1.S1_at--347--4711Chr02:28724967..28724991 (25 bp)
GCTGGTGGGAGCTCATTTATGCAAG
LOC_Os02g47060
Target Sequence 
GTCAAGGCGGAACCCAACGATCAATCCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGT
AGGGACGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTGCTTCAGCCACGGCGG
CGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGAGCTACCGGCCGATGATACCGGAGGCAGCGGCCGGC
GGCCACCACGACGACTTCTTCGCCGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACAT
GGCGACCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCTTGGATCCAGCGTACA
TGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGAGCTCATTTATGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis