Browse Element(s) Details


Os.56367.1.A1_at

Description gb:AK109931.1
DB_XREF= gi:32995140
TID=Os.56367.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B06, full insert sequence.
FL= gb:AK109931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4709011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed
LOC_Os02g47070OsAffx.12533.1.S1_at11/112+28732333..28733209hypothetical protein
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56367.1.A1_at--826--531Chr02:28746655..28746679 (25 bp)
ATCGCGCTCGGGAGCTACCTGAGCT
LOC_Os02g47090
Os.56367.1.A1_at--174--7451Chr02:28746814..28746838 (25 bp)
GTGTACAGCGGGTTCGCCAAGAACT
LOC_Os02g47090
Os.56367.1.A1_at--279--2771Chr02:28746847..28746871 (25 bp)
AAGACCGTGCTCTCGTGAGACGTCA
LOC_Os02g47090
Os.56367.1.A1_at--829--5991Chr02:28746863..28746887 (25 bp)
GAGACGTCATTGTTAGCTTTGCAGC
LOC_Os02g47090
Os.56367.1.A1_at--201--4891Chr02:28746878..28746902 (25 bp)
GCTTTGCAGCTGCTTGTCGAACACA
LOC_Os02g47090
Os.56367.1.A1_at--1118--10391Chr02:28746921..28746945 (25 bp)
TTTTGCACAATTGCCAAGTTGCGAT
LOC_Os02g47090
Os.56367.1.A1_at--96--10491Chr02:28746976..28747000 (25 bp)
TTACAGAGTACAGACACAATTGCCA
LOC_Os02g47090
Os.56367.1.A1_at--430--9031Chr02:28747094..28747118 (25 bp)
TGCACAGATCCTATGGCATGTCAGC
LOC_Os02g47090
Os.56367.1.A1_at--884--10091Chr02:28747105..28747129 (25 bp)
TATGGCATGTCAGCAACACTTTTTT
LOC_Os02g47090
Os.56367.1.A1_at--292--6591Chr02:28747166..28747190 (25 bp)
GATTGCCAATGTACCTTTTTCATAT
LOC_Os02g47090
Os.56367.1.A1_at--600--10371Chr02:28747182..28747206 (25 bp)
TTTTCATATGCAATTCGATCTAAGG
LOC_Os02g47090
Target Sequence 
ATCGCGCTCGGGAGCTACCTGAGCTCGCTCATCTACGCCGTCGTGGAGGCGTTCACGGCGACGGCGGGCGGCCACGGGTG
GATCTCCGACGACCTCAACCAGGGCCACCTCGACTACTTCTTCTGGATGCTGGCGGCCATGTGCACGCTCAACTTCGTCG
TGTACAGCGGGTTCGCCAAGAACTACAAGCTCAAGACCGTGCTCTCGTGAGACGTCATTGTTAGCTTTGCAGCTGCTTGT
CGAACACAAGAAAGATTCGATTACATTTTTGCACAATTGCCAAGTTGCGATTGGTGAAAGGTAGTAGTACAGTACAGATT
ATTACAGAGTACAGACACAATTGCCAATTGGCGATTGGTGAAAGGTAGTACAGGAAGAAAATTAGTGCAGAATTATTTTC
CCCTTTCTCTCTCTCTCTCTCTCTTTTAAAAAAAAGTGCTGCACAGATCCTATGGCATGTCAGCAACACTTTTTTTAGAT
GATCATTTTTTGTTGAAAGATTACAGGATATGATTGCCAATGTACCTTTTTCATATGCAATTCGATCTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56367.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis