Browse Element(s) Details


OsAffx.24761.1.S1_at

Description tigr:9630.m04582
TID=OsAffx.24761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to relAspoT-like protein RSH2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4712011/11RelA/SpoT containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47070OsAffx.12533.1.S1_at11/112+28732333..28733209hypothetical protein
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24761.1.S1_at--576--4091Chr02:28760796..28760820 (25 bp)
CGACGCGGAGCATCACTTGTGGAGA
LOC_Os02g47120
OsAffx.24761.1.S1_at--60--8251Chr02:28760835..28760859 (25 bp)
GGCACATGTACTGAACCAATCCTTC
LOC_Os02g47120
OsAffx.24761.1.S1_at--782--3031Chr02:28760852..28760876 (25 bp)
AATCCTTCGTGAGGTGGCCATCATC
LOC_Os02g47120
OsAffx.24761.1.S1_at--52--3551Chr02:28760873..28760897 (25 bp)
CATCTGCTGGCCGTACGGGAAGATA
LOC_Os02g47120
OsAffx.24761.1.S1_at--459--2691Chr02:28760958..28760982 (25 bp)
AAGCTGCTTTGGGTTAATGGCCAAC
LOC_Os02g47120
OsAffx.24761.1.S1_at--1026--2951Chr02:28760973..28760997 (25 bp)
AATGGCCAACTTGTGTTGCCCCAGA
LOC_Os02g47120
OsAffx.24761.1.S1_at--416--7991Chr02:28761031..28761055 (25 bp)
GGATGTAGCTGATGCGCCATATCTC
LOC_Os02g47120
OsAffx.24761.1.S1_at--408--471Chr02:28761051..28761075 (25 bp)
ATCTCCTCTGCCCAGGGTTATTGAT
LOC_Os02g47120
OsAffx.24761.1.S1_at--1011--5791Chr02:28761130..28761154 (25 bp)
GACCCTAGGGTCGTAACAGACTGAA
LOC_Os02g47120
OsAffx.24761.1.S1_at--831--3171Chr02:28761192..28761216 (25 bp)
CAATTGTACAGTCCATTTGTCGATA
LOC_Os02g47120
OsAffx.24761.1.S1_at--656--4851Chr02:28761270..28761294 (25 bp)
GCTACCAACTGTATGTATCCTTGTT
LOC_Os02g47120
Target Sequence 
CGACGCGGAGCATCACTTGTGGAGAAAAGCCTCAGTGTAGGCACATGTACTGAACCAATCCTTCGTGAGGTGGCCATCAT
CTGCTGGCCGTACGGGAAGATAATGAGGATGAGCCTAGGCAGCACAGCCGCTGATGCTGCTAGAAGAATGGGCGTTGAAG
GGAAGCTGCTTTGGGTTAATGGCCAACTTGTGTTGCCCCAGACCGAGCTCAAGGATGGGGATATAGTTGAAGTGAGGATG
TAGCTGATGCGCCATATCTCCTCTGCCCAGGGTTATTGATAAAATTGGTTTGAGGTTCAATCAACTATGTAGGGTACATT
ACCTGAAAATCAACGACCCTAGGGTCGTAACAGACTGAAGATTAAGAAAACGTAGAAAACCAACAGCCCAATACCTCAAT
TGTACAGTCCATTTGTCGATAAGAATCCAAGGATGCGGGATTTATGTACAGGAAGTGCTATATCTGTACATAAAGCTACC
AACTGTATGTATCCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis