Browse Element(s) Details


Os.11528.1.S1_at

Description gb:AK121709.1
DB_XREF= gi:37991332
TID=Os.11528.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076B01, full insert sequence.
FL= gb:AK121709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4714011/1160S ribosomal protein L12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0009282cellular_componentcytosolic large ribosomal subunit (sensu Bacteria)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11528.1.S1_at--1049--4051Chr02:28767490..28767514 (25 bp)
CGAGGGTCATGAGGCCCAGGTCCAT
LOC_Os02g47140
Os.11528.1.S1_at--346--1291Chr02:28767634..28767656 (23 bp)
AGATCCCCTCAGCTTAAGCAGGTTT
LOC_Os02g47140
Os.11528.1.S1_at--642--8671Chr02:28768022..28768046 (25 bp)
TGTGAGGCTGCTGAAGTAGTTTTTC
LOC_Os02g47140
Os.11528.1.S1_at--160--5331Chr02:28768034..28768058 (25 bp)
GAAGTAGTTTTTCTACCTAGATGGT
LOC_Os02g47140
Os.11528.1.S1_at--548--4811Chr02:28768104..28768128 (25 bp)
GCTCTTGCTCAAGAAGTAAACTTTT
LOC_Os02g47140
Os.11528.1.S1_at--382--10251Chr02:28768126..28768150 (25 bp)
TTTGTCATGCTTAAAGTGGTACCAT
LOC_Os02g47140
Os.11528.1.S1_at--681--2871Chr02:28768139..28768163 (25 bp)
AAGTGGTACCATGTGAGACTTTTTT
LOC_Os02g47140
Os.11528.1.S1_at--97--791Chr02:28768149..28768173 (25 bp)
ATGTGAGACTTTTTTTGCCATGCTA
LOC_Os02g47140
Os.11528.1.S1_at--402--4871Chr02:28768170..28768194 (25 bp)
GCTATATTGTTTACCTTGCGAAATC
LOC_Os02g47140
Os.11528.1.S1_at--331--6831Chr02:28768178..28768202 (25 bp)
GTTTACCTTGCGAAATCAATGTTGT
LOC_Os02g47140
Os.11528.1.S1_at--995--9731Chr02:28768193..28768217 (25 bp)
TCAATGTTGTTAATGCAGCTAGATT
LOC_Os02g47140
Target Sequence 
CGAGGGTCATGAGGCCCAGGTCCATGGCCAAGGAGATGGCCGGCACCGTCAAGGAGATCCTCGGCACCTGCGTCAGCGTC
GGCTGCACCGTGGACGGCAAGGACCCCAAGGACCTGCAGCAGGAGATCTCCGACGGCGAGGTCGAGATCCCCTCAGCTTA
AGCAGGTTTNGNCATTGGGGTGGTTGTTATGTGAGGCTGCTGAAGTAGTTTTTCTACCTAGATGGTTNNTGGTGCAGTGC
AGAGAATGGAAGCTTGNTCTGTTCTTGTTCTGCTCTTGCTCAAGAAGTAAACTTTTGTCATGCTTAAAGTGGTACCATGT
GAGACTTTTTTTGCCATGCTATATTGTTTACCTTGCGAAATCAATGTTGTTAATGCAGCTAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis