Browse Element(s) Details


Os.21365.1.S1_at

Description gb:AK100709.1
DB_XREF= gi:32985918
TID=Os.21365.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115E12, full insert sequence.
FL= gb:AK100709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4717011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21365.1.S1_at--93--7591Chr02:28790277..28790301 (25 bp)
GGGCTTTTCAGTCATTTGGGCTACA
LOC_Os02g47170
Os.21365.1.S1_at--738--5131Chr02:28790241..28790265 (25 bp)
GCAAATGGCATGGTTACTTCAATAT
LOC_Os02g47170
Os.21365.1.S1_at--3--1511Chr02:28790159..28790183 (25 bp)
AGCACCTGTATATTTCTAACTGGAG
LOC_Os02g47170
Os.21365.1.S1_at--431--8551Chr02:28790139..28790163 (25 bp)
TGGAGGTTGAGACCCTTTAGGCTCT
LOC_Os02g47170
Os.21365.1.S1_at--497--10351Chr02:28790124..28790148 (25 bp)
TTTAGGCTCTCATCACGAGTGCTTC
LOC_Os02g47170
Os.21365.1.S1_at--516--1131Chr02:28790107..28790131 (25 bp)
AGTGCTTCTTGGTTCTCACACAGTA
LOC_Os02g47170
Os.21365.1.S1_at--90--2451Chr02:28790021..28790045 (25 bp)
AAAATGGCTTTTGGCATAGCTGTCT
LOC_Os02g47170
Os.21365.1.S1_at--817--351Chr02:28789898..28789922 (25 bp)
ATAATCCCCTCAGTTATATTCAGAT
LOC_Os02g47170
Os.21365.1.S1_at--109--1271Chr02:28789877..28789901 (25 bp)
AGATTTGCCTGTTATTTACTGTCCA
LOC_Os02g47170
Os.21365.1.S1_at--288--1211Chr02:28789842..28789866 (25 bp)
AGTTTCTTCGACTGTATGTTCTGTT
LOC_Os02g47170
Os.21365.1.S1_at--411--711Chr02:28789755..28789779 (25 bp)
ATGTAGTTTTTCTCTGTATCCCGTT
LOC_Os02g47170
Target Sequence 
GGGCTTTTCAGTCATTTGGGCTACAGTCAGTAAAGAGCAAATGGCATGGTTACTTCAATATAACTTGGGAACAGCTGATA
ACTAATTAGCAGTGGTGACATGACATGTAAAGATCAACAGCACCTGTATATTTCTAACTGGAGGTTGAGACCCTTTAGGC
TCTCATCACGAGTGCTTCTTGGTTCTCACACAGTAGTTGANGCCAATGACTCCANTGGAGGGGAAATTCTTTGCAGAGCN
ANACAGTGTTGGTGACTATAAAAATGGCTTTTGGCATAGCTGTCTCCTGTAAAGTACTAACTTCAGCATTTTAGGATGTC
TATTTAGCTAATCTTATGCATTCATCTCATAGTCAATAGTTCATAGTTTCTCTGATNTCATGTATAATCCCCTCAGTTAT
ATTCAGATTTGCCTGTTATTTACTGTCCANAAGAATTAATAGTTTCTTCGACTGTATGTTCTGTTTATAAGCATGTGTAG
CNATTCGATGTAATATATCATAACTATTACACCNAGTTGATGTTAACAATGTAGTTTTTCTCTGTATCCCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis