Browse Element(s) Details


Os.26575.1.S1_at

Description gb:AK102954.1
DB_XREF= gi:32988163
TID=Os.26575.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115E13, full insert sequence.
FL= gb:AK102954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g471808/11Cell division cycle protein 20 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26575.1.S1_at--486--10131Chr02:28799524..28799548 (25 bp)
TATCTTCGACTTCAAGTTCACAAAG
LOC_Os02g47180
Os.26575.1.S1_at--581--7331Chr02:28799572..28799596 (25 bp)
GTGCAAAACCTTATCACTTATCGGG
LOC_Os02g47180
Os.26575.1.S1_at--832--3011Chr02:28799603..28799627 (25 bp)
AATGCTGAGTTGGTGACTTGAGATA
LOC_Os02g47180
Os.26575.1.S1_at--610--3591Chr02:28799740..28799764 (25 bp)
CTTGTTTTAATTGCGCCAAAAGATC
LOC_Os02g47180
Os.26575.1.S1_at--220--5351Chr02:28799772..28799796 (25 bp)
GAAGAATCTTTTGGTGGAAACATCA
LOC_Os02g47180
Os.26575.1.S1_at--510--231Chr02:28799838..28799862 (25 bp)
ATATTTATGTACGTTCTTCCTCCGT
LOC_Os02g47180
Os.26575.1.S1_at--691--10391Chr02:28799969..28799993 (25 bp)
TTTTGTTAGTTCATCCAGAGTACGG
LOC_Os02g47180
Os.26575.1.S1_at--899--1171Chr02:28799987..28800011 (25 bp)
AGTACGGACACATTTGACCAAGGTT
LOC_Os02g47180
Os.26575.1.S1_at--852--5851NONE
GACCAAGGTTCTAACTTCTCTTGAC
NONE
Os.26575.1.S1_at--1109--9511NONE
TCTCTTGACAGATAGTAGCACTTGC
NONE
Os.26575.1.S1_at--665--5191NONE
GCAATTTTTGGTCATCTGAAGCAGT
NONE
Target Sequence 
TATCTTCGACTTCAAGTTCACAAAGAGCACCAAAAAGAACCTGGAAATGTGCAAAACCTTATCACTTATCGGGGAATGAA
ATGCTGAGTTGGTGACTTGAGATAGGAATATATACTTCTGGCAATTTAGTTAGTTATTCTGTACATTATCTAAAAAAAAG
TTAGTTNTTCTGTAGAGCATATGTAAAGCACACACATAGTATCTAAAAAAATTGANCTTGTTTTAATTGCGCCAAAAGAT
CAATTTTTGAAGAATCTTTTGGTGGAAACATCAAATGATCGGTTTGATGTAACAAAACAAGAGGTGTAGTTCAAATATTT
ATGTACGTTCTTCCTCCGTTTCNTATCATACTATTCAAAACTAGTCGTTTGACCTTTTTTAGTCAAATTTTATCTAGTTT
GATCAATTTTTCAATACAAAACAAACATATTTGTAGTAGTAGTATTTTTTGTTAGTTCATCCAGAGTACGGACACATTTG
ACCAAGGTTCTAACTTCTCTTGACAGATAGTAGCACTTGCAATTTTTGGTCATCTGAAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis