Browse Element(s) Details


OsAffx.14178.1.S1_x_at

Description tigr:9633.m00331
TID=OsAffx.14178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0406011/11expressed protein
LOC_Os02g472101/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04020OsAffx.14532.1.S1_at11/115+1782207..1789120expressed protein
LOC_Os05g04030Os.28943.1.S1_x_at1/115+1792305..1795440retrotransposon protein, putative, unclassified
LOC_Os05g04040NANA5+1796062..1802013retrotransposon protein, putative, unclassified
LOC_Os05g04050OsAffx.14533.1.S1_at11/115+1804441..1804668hypothetical protein
LOC_Os05g04060OsAffx.14178.1.S1_x_at11/115+1806293..1808076expressed protein
LOC_Os05g04060Os.56241.1.S1_at11/115+1806293..1808076expressed protein
LOC_Os05g04070Os.22623.1.S1_x_at11/115+1808764..1811351expressed protein
LOC_Os05g04070Os.22623.1.S1_at10/115+1808764..1811351expressed protein
LOC_Os05g04080OsAffx.30733.1.S1_x_at1/115+1816193..1816851hypothetical protein
LOC_Os05g04090Os.22623.1.S1_x_at4/115+1818641..1819674hypothetical protein
LOC_Os05g04100NANA5+1820877..1821560hypothetical protein
LOC_Os05g04110NANA5+1822165..1822578hypothetical protein
LOC_Os05g04120OsAffx.26723.1.S1_x_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.26723.1.S1_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.4836.1.S1_at2/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04130NANA5+1827224..1827961hypothetical protein
LOC_Os05g04140NANA5+1829561..1829893hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14178.1.S1_x_at--208--2691Chr05:1806936..1806960 (25 bp)
AAGCTGGCGCACGAGGACAAGCTGC
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--1154--4511Chr05:1806877..1806901 (25 bp)
GCCGCTGCTGCTGAACCTGATGGCG
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--33--2631Chr05:1806864..1806888 (25 bp)
AACCTGATGGCGTTCGAGCAGTCGG
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--710--5751Chr05:1806819..1806843 (25 bp)
GACGTGTCGGCGTACGTGTCGTTCA
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--320--4651Chr05:1806810..1806834 (25 bp)
GCGTACGTGTCGTTCATGGCGAAGA
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--129--4031Chr05:1806800..1806824 (25 bp)
CGTTCATGGCGAAGATGGTGCAGTC
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--671--8251Chr05:1806593..1806617 (25 bp)
GGCACCCGCTGTTCATGATGTGGGC
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--1139--8331Chr05:1806571..1806595 (25 bp)
GGCGGACGTGAAGCGCAACTACTTC
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--804--2531Chr05:1806555..1806579 (25 bp)
AACTACTTCACGGTGCCATGGGCGG
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--1069--7732Chr05:1806532..1806556 (25 bp)
GGTGGTCGCCGAGTTCGTCGCCTTC
LOC_Os05g04060
OsAffx.14178.1.S1_x_at--358--3651Chr05:1806502..1806526 (25 bp)
CTTCGTCTCCACCATTGTCCAGATG
LOC_Os05g04060
Target Sequence 
AAGCTGGCGCACGAGGACAAGCTGCGGCTGCCGCAGCTGCGGGTGGAGCTCCGGACGGCGCCGCTGCTGCTGAACCTGAT
GGCGTTCGAGCAGTCGGCGGCGAAGGCGGAGGCGCGCGACGTGTCGGCGTACGTGTCGTTCATGGCGAAGATGGTGCAGT
CGGCGGAGGACGCCGGGGCGCTGGCGGCGGCGGAGGTGGTGGCGGTGGTGCACGGGAACGGCGGCGGCGAGGGCAAGGAG
GAGGTGGTGAGGCTGTTCCGGCAGGTCGGGGCGGCGAGCGGCGAGGTGGAGCTGGAGCGGAGCTACCTGGGAGGGATGGT
GGTGGAGCTCCGGGAGAGGAGCCGGCACCCGCTGTTCATGATGTGGGCGGACGTGAAGCGCAACTACTTCACGGTGCCAT
GGGCGGTGGTCGCCGAGTTCGTCGCCTTCGTCACCTTCGTCTCCACCATTGTCCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14178.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis