Browse Element(s) Details


OsAffx.14532.1.S1_at

Description tigr:9633.m00327
TID=OsAffx.14532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0402011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03960NANA5+1759685..1760400hypothetical protein
LOC_Os05g03972Os.52089.1.S1_at11/115+1763167..1769307expressed protein
LOC_Os05g03984Os.50521.1.S1_at11/115+1771516..1772542NA
LOC_Os05g04000Os.48986.1.S1_s_at1/115+1774104..1774587hypothetical protein
LOC_Os05g04010NANA5+1777706..1778200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04020OsAffx.14532.1.S1_at11/115+1782207..1789120expressed protein
LOC_Os05g04030Os.28943.1.S1_x_at1/115+1792305..1795440retrotransposon protein, putative, unclassified
LOC_Os05g04040NANA5+1796062..1802013retrotransposon protein, putative, unclassified
LOC_Os05g04050OsAffx.14533.1.S1_at11/115+1804441..1804668hypothetical protein
LOC_Os05g04060OsAffx.14178.1.S1_x_at11/115+1806293..1808076expressed protein
LOC_Os05g04060Os.56241.1.S1_at11/115+1806293..1808076expressed protein
LOC_Os05g04070Os.22623.1.S1_x_at11/115+1808764..1811351expressed protein
LOC_Os05g04070Os.22623.1.S1_at10/115+1808764..1811351expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14532.1.S1_at--796--9131Chr05:1786788..1786812 (25 bp)
TGCGGCTCAGGAAAAGCCTTGAGAT
LOC_Os05g04020
OsAffx.14532.1.S1_at--1047--10751Chr05:1786770..1786794 (25 bp)
TTGAGATCAGACTAATACCGCCGGA
LOC_Os05g04020
OsAffx.14532.1.S1_at--686--9731Chr05:1786758..1786782 (25 bp)
TAATACCGCCGGAGCTAGAGGTGCC
LOC_Os05g04020
OsAffx.14532.1.S1_at--799--3211Chr05:1786648..1786672 (25 bp)
CAAGACCAGCAAACCCAAGGGCGGA
LOC_Os05g04020
OsAffx.14532.1.S1_at--717--2631Chr05:1782398..1782422 (25 bp)
AACCTATGCCGGTGGAATCAGCGGA
LOC_Os05g04020
OsAffx.14532.1.S1_at--564--6191Chr05:1782368..1782392 (25 bp)
GAGGACACACCCATCGGCAAGGTGC
LOC_Os05g04020
OsAffx.14532.1.S1_at--763--3211Chr05:1782351..1782375 (25 bp)
CAAGGTGCTCGATCAGCTCAGGGTA
LOC_Os05g04020
OsAffx.14532.1.S1_at--1084--391Chr05:1782340..1782364 (25 bp)
ATCAGCTCAGGGTATGTAGCCAGTA
LOC_Os05g04020
OsAffx.14532.1.S1_at--163--6971Chr05:1782325..1782349 (25 bp)
GTAGCCAGTACCAATTATACCGAGA
LOC_Os05g04020
OsAffx.14532.1.S1_at--55--10171Chr05:1782310..1782334 (25 bp)
TATACCGAGATTGGGCGGAAGCGAA
LOC_Os05g04020
OsAffx.14532.1.S1_at--247--2451Chr05:1782263..1782287 (25 bp)
AAAATCCTTGCGCTCGTCGTGTCTA
LOC_Os05g04020
Target Sequence 
TGCGGCTCAGGAAAAGCCTTGAGATCAGACTAATACCGCCGGAGCTAGAGGTGCCGGCGCTGTCCGTCGAGGAGGCCACG
GCGGTGCTTCTGCAGAACCTCGTCGCCTACGAGCAGCAGGGCACGCCGGCGCGGCAAGGACAAGACCAGCAAACCCAAGG
GCGGAAGGGCAAGGACTACTTCACCACCTACGCCTTCCTCATGTACAACCTCGTCAGCTCCACGGAGGACATCGCCGAGC
TCCAGGAGAAGGGCGTCCTCCTCAACAACTTCGGAAGCCATGAAACGATCATCAATTACTTCAAGAACCTATGCCGGTGG
AATCAGCGGAGCAAGGAGGACACACCCATCGGCAAGGTGCTCGATCAGCTCAGGGTATGTAGCCAGTACCAATTATACCG
AGATTGGGCGGAAGCGAAGAAGTACATGGACACCCCTGTCAAAATCCTTGCGCTCGTCGTGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis