Browse Element(s) Details


Os.52089.1.S1_at

Description gb:AK064692.1
DB_XREF= gi:32974710
TID=Os.52089.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F01, full insert sequence.
FL= gb:AK064692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0397211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03940NANA5+1744708..1748981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.14491.2.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.47463.1.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03960NANA5+1759685..1760400hypothetical protein
LOC_Os05g03972Os.52089.1.S1_at11/115+1763167..1769307expressed protein
LOC_Os05g03984Os.50521.1.S1_at11/115+1771516..1772542NA
LOC_Os05g04000Os.48986.1.S1_s_at1/115+1774104..1774587hypothetical protein
LOC_Os05g04010NANA5+1777706..1778200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04020OsAffx.14532.1.S1_at11/115+1782207..1789120expressed protein
LOC_Os05g04030Os.28943.1.S1_x_at1/115+1792305..1795440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52089.1.S1_at--666--2631Chr05:1763738..1763762 (25 bp)
AACCTATGCCGAGGTAATCAGCGGA
LOC_Os05g03972
Os.52089.1.S1_at--706--5371Chr05:1763700..1763724 (25 bp)
GAAGACACACATCGGCAAGGTGCTG
LOC_Os05g03972
Os.52089.1.S1_at--609--5071Chr05:1763659..1763683 (25 bp)
GCAGCCAGAACAAAGCGTATCGTTA
LOC_Os05g03972
Os.52089.1.S1_at--643--4031Chr05:1763644..1763668 (25 bp)
CGTATCGTTACTGGGCGGAGGCCAA
LOC_Os05g03972
Os.52089.1.S1_at--445--10571Chr05:1763531..1763555 (25 bp)
TTCTATCCCAAATGATACACCTCGC
LOC_Os05g03972
Os.52089.1.S1_at--201--6451Chr05:1763480..1763504 (25 bp)
GATCAGTTATTTTTCGCTCCTAATT
LOC_Os05g03972
Os.52089.1.S1_at--502--8211Chr05:1763423..1763447 (25 bp)
GGAATAATGCTAGTACTACCTAACT
LOC_Os05g03972
Os.52089.1.S1_at--417--8571Chr05:1763282..1763306 (25 bp)
TGGATTAATTTGTGTGCGCGCTCGT
LOC_Os05g03972
Os.52089.1.S1_at--335--4811Chr05:1763263..1763287 (25 bp)
GCTCGTGGAGTTCAGATCCTCAGCA
LOC_Os05g03972
Os.52089.1.S1_at--397--7411Chr05:1763235..1763259 (25 bp)
GTGATATATTTTGTCGGTGTTACCA
LOC_Os05g03972
Os.52089.1.S1_at--1116--7571Chr05:1763176..1763200 (25 bp)
GGGCACCTACAATTTGGGCCTTGAT
LOC_Os05g03972
Target Sequence 
AACCTATGCCGAGGTAATCAGCGGAGCGGCACGGAGGAGAAGACACACATCGGCAAGGTGCTGCAGGGGCTCAGGGATTG
CAGCCAGAACAAAGCGTATCGTTACTGGGCGGAGGCCAAGAAGTACATGGACAGCCCTGTCAAAATCCTCGCGCTCATCG
TCTCCACTCTTCTCGCCATCTCCACTGTCTTGCAGACTACCGTCGCCTTCTATCCCAAATGATACACCTCGCCCTTCATT
CCATGCCCAACTAATTATGATCAGTTATTTTTCGCTCCTAATTAACTTTCAAATTTGGATAAAATTTATTTACTTGGAAT
AATGCTAGTACTACCTAACTTTTAAGTTCATTTCGAAGATTTAAGGCTTCATTAAAAGCTTAATTCAGCTTCAAAAATAA
ACCCTACCCTATTGGTAATTATCTTATGTCATCTTAGCTATACATATATATGTGTGTGGATTAATTTGTGTGCGCGCTCG
TGGAGTTCAGATCCTCAGCATTAGTGATATATTTTGTCGGTGTTACCAAAATGTTGTAATAATTTAATACATCAAATAAG
TGGGGCACCTACAATTTGGGCCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis