Browse Element(s) Details


Os.48986.1.S1_s_at

Description gb:AK063251.1
DB_XREF= gi:32973269
TID=Os.48986.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H04, full insert sequence.
FL= gb:AK063251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g040001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03950Os.14491.2.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.47463.1.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03960NANA5+1759685..1760400hypothetical protein
LOC_Os05g03972Os.52089.1.S1_at11/115+1763167..1769307expressed protein
LOC_Os05g03984Os.50521.1.S1_at11/115+1771516..1772542NA
LOC_Os05g04000Os.48986.1.S1_s_at1/115+1774104..1774587hypothetical protein
LOC_Os05g04010NANA5+1777706..1778200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04020OsAffx.14532.1.S1_at11/115+1782207..1789120expressed protein
LOC_Os05g04030Os.28943.1.S1_x_at1/115+1792305..1795440retrotransposon protein, putative, unclassified
LOC_Os05g04040NANA5+1796062..1802013retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48986.1.S1_s_at--835--4831Chr05:1774085..1774107 (23 bp)
GCTACTACTCGAAGGCAAAATGGAC
NONE
Os.48986.1.S1_s_at--355--9191Chr05:1774471..1774495 (25 bp)
TGCCTCTGCGTGTCGTGCTACGGCG
LOC_Os05g04000
Os.48986.1.S1_s_at--50--9051Chr05:1774566..1774590 (25 bp)
TGCAGGCTCCAACTGTACCTGATCT
NONE
Os.48986.1.S1_s_at--1142--231Chr05:1774603..1774627 (25 bp)
ATATAGCTTGCTAGCGATCGAGCTC
NONE
Os.48986.1.S1_s_at--295--471Chr05:1774634..1774658 (25 bp)
ATCTCGCACCTAGCTTGATCATGTC
NONE
Os.48986.1.S1_s_at--1162--6431Chr05:1774650..1774674 (25 bp)
GATCATGTCGAGCAACCATGTACGT
NONE
Os.48986.1.S1_s_at--396--6391Chr05:1774678..1774702 (25 bp)
GATCGACATGATCACTCTAGCTAGC
NONE
Os.48986.1.S1_s_at--826--3711Chr05:1774702..1774726 (25 bp)
CTAGCTAGCTACTTCATATGGATGT
NONE
Os.48986.1.S1_s_at--153--9031Chr05:1774770..1774794 (25 bp)
TGCAACTATGCAAGCATGCCCGTCT
NONE
Os.48986.1.S1_s_at--602--4531Chr05:1774787..1774811 (25 bp)
GCCCGTCTCCAATTACTGGTACAGA
NONE
Os.48986.1.S1_s_at--564--3111Chr05:1774900..1774924 (25 bp)
AATTAGCAGCGTTCTGAATTCATTC
NONE
Target Sequence 
GCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGC
CGCCGAAGCAGAACGGCCCCCAGAACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTAC
GGCGGCGTCGCAAANCCAAAGGCGCCCAAGTCGTCGTCGCCGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGG
CTCCAACTGTACCTGATCTTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGA
TCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT
AAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGA
CTACAGAGTGATGTATGTTACGAGAAATGTACTCTTTACAAATACCATGAACATATATTATGATCAATTACATGACAGTT
GTATTATTAATTAGCAGCGTTCTGAATTCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48986.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis