Browse Element(s) Details


Os.56241.1.S1_at

Description gb:AK109681.1
DB_XREF= gi:32994890
TID=Os.56241.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D01, full insert sequence.
FL= gb:AK109681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0406011/11expressed protein
LOC_Os12g087701/11Photosystem I reaction centre subunit N, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04020OsAffx.14532.1.S1_at11/115+1782207..1789120expressed protein
LOC_Os05g04030Os.28943.1.S1_x_at1/115+1792305..1795440retrotransposon protein, putative, unclassified
LOC_Os05g04040NANA5+1796062..1802013retrotransposon protein, putative, unclassified
LOC_Os05g04050OsAffx.14533.1.S1_at11/115+1804441..1804668hypothetical protein
LOC_Os05g04060OsAffx.14178.1.S1_x_at11/115+1806293..1808076expressed protein
LOC_Os05g04060Os.56241.1.S1_at11/115+1806293..1808076expressed protein
LOC_Os05g04070Os.22623.1.S1_x_at11/115+1808764..1811351expressed protein
LOC_Os05g04070Os.22623.1.S1_at10/115+1808764..1811351expressed protein
LOC_Os05g04080OsAffx.30733.1.S1_x_at1/115+1816193..1816851hypothetical protein
LOC_Os05g04090Os.22623.1.S1_x_at4/115+1818641..1819674hypothetical protein
LOC_Os05g04100NANA5+1820877..1821560hypothetical protein
LOC_Os05g04110NANA5+1822165..1822578hypothetical protein
LOC_Os05g04120OsAffx.26723.1.S1_x_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.26723.1.S1_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.4836.1.S1_at2/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04130NANA5+1827224..1827961hypothetical protein
LOC_Os05g04140NANA5+1829561..1829893hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009522cellular_componentphotosystem I
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56241.1.S1_at--1081--7951Chr05:1806453..1806477 (25 bp)
GGATGATCTCGTCCAGACCGACCGC
LOC_Os05g04060
Os.56241.1.S1_at--207--3411Chr05:1806440..1806464 (25 bp)
CAGACCGACCGCCATGGAATTAATC
LOC_Os05g04060
Os.56241.1.S1_at--428--5151Chr05:1806438..1806462 (25 bp)
GACCGACCGCCATGGAATTAATCCA
LOC_Os05g04060
Os.56241.1.S1_at--160--831Chr05:1806427..1806451 (25 bp)
ATGGAATTAATCCATCGATACTCCC
LOC_Os05g04060
Os.56241.1.S1_at--1002--9355Chr11:23165067..23165087 (21 bp)
TCGATACTCCCACCGTCCCATAAAA
NONE
Os.56241.1.S1_at--510--2753Chr05:1806393..1806417 (25 bp)
TAAAAAACCGAATCTAGGACCAGAT
LOC_Os05g04060
Os.56241.1.S1_at--918--2611Chr05:1806388..1806412 (25 bp)
AACCGAATCTAGGACCAGATATGAT
LOC_Os05g04060
Os.56241.1.S1_at--960--80911Chr06:27391733..27391752 (20 bp)
GGACCAGATATGATATATTCTAGTA
NONE
Os.56241.1.S1_at--959--9916Chr10:281874..281893 (20 bp)
TACTGATTTGTAGTACTAGGATGTA
NONE
Os.56241.1.S1_at--1079--6274Chr12:4506365..4506399 (25 bp)
GATGTATCACATCTAGTTTTTTATG
LOC_Os12g08770
Os.56241.1.S1_at--23--3933Chr12:7279844..7279879 (25 bp)
ATCACATCTAGTTTTTTATGGGACG
NONE
Target Sequence 
GGATGATCTCGTCCAGACCGACCGCCATGGAATTAATCCATCGATACTCCCACCGTCCCATAAAAAACCGAATCTAGGAC
CAGATATGATATATTCTAGTACGATAAATCTAGATATATGTATGTACTGATTTGTAGTACTAGGATGTATCACATCTAGT
TTTTTATGGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis