Browse Element(s) Details


OsAffx.4836.1.S1_at

Description tigr:9634.m01415
TID=OsAffx.4836.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1417011/11hypothetical protein
LOC_Os05g041202/11Ferroportin1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14130OsAffx.21897.5.S1_x_at2/116+7879382..7882327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14140NANA6+7882644..7888739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14150Os.31312.2.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14150Os.31312.5.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14160NANA6+7895480..7900970retrotransposon protein, putative, unclassified
LOC_Os06g14170OsAffx.4836.1.S1_at11/116+7905229..7906515hypothetical protein
LOC_Os06g14170OsAffx.10596.1.S1_at1/116+7905229..7906515hypothetical protein
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4836.1.S1_at--591--1091Chr06:7906267..7906291 (25 bp)
AGGGCCTCCTGCAATTGATTACATA
LOC_Os06g14170
OsAffx.4836.1.S1_at--830--3571Chr06:7906246..7906270 (25 bp)
CATAGATCGTCGTTGCTTTCTTCAA
LOC_Os06g14170
OsAffx.4836.1.S1_at--161--4891Chr06:7906232..7906256 (25 bp)
GCTTTCTTCAATCTATCTCCAATGT
LOC_Os06g14170
OsAffx.4836.1.S1_at--53--9571Chr06:7906206..7906230 (25 bp)
TCTTCAATCTCCATGGATCGTGTGA
LOC_Os06g14170
OsAffx.4836.1.S1_at--769--831Chr06:7906194..7906218 (25 bp)
ATGGATCGTGTGATTGAAGCTAGCA
LOC_Os06g14170
OsAffx.4836.1.S1_at--904--3431Chr06:7905637..7905661 (25 bp)
CAGATCGGAGAATCTTTGCGTCCTT
LOC_Os06g14170
OsAffx.4836.1.S1_at--509--3051Chr06:7905627..7905651 (25 bp)
AATCTTTGCGTCCTTGTTCTGATTT
LOC_Os06g14170
OsAffx.4836.1.S1_at--908--8771Chr06:7905594..7905618 (25 bp)
TGTTTCCTCAATTGTTTGACCGTGA
LOC_Os06g14170
OsAffx.4836.1.S1_at--1101--9212Chr06:7905455..7905479 (25 bp)
TCCACCAGGGTGAGATGACGCGCAT
LOC_Os06g14170
OsAffx.4836.1.S1_at--65--5812Chr06:7905439..7905463 (25 bp)
GACGCGCATGGTTACCATTGCTGAC
LOC_Os06g14170
OsAffx.4836.1.S1_at--743--2351Chr06:7905414..7905438 (25 bp)
AAAGCTCGTCTTGTTAATGGTGTGT
LOC_Os06g14170
Target Sequence 
AGGGCCTCCTGCAATTGATTACATAGATCGTCGTTGCTTTCTTCAATCTATCTCCAATGTTTCTTCAATCTCCATGGATC
GTGTGATTGAAGCTAGCAGGGGCAGGCAGGCCACCAATGCCAACGCGATGCTCAGCAGAGTCGATCTCCTCTGCGAGATA
TTCAGATCGGAGAATCTTTGCGTCCTTGTTCTGATTTGCTTGCATTGTTTCCTCAATTGTTTGACCGTGAGGCGCGGGTG
GAGCGAGTACGTGCAGCAGCCGGTGCTCCCGGCGAACCTCGCCAACGTGCTCGTCTGCTTCAACGTCGCCCTCGCTCCCG
GCGCGCTCATGACTACCTTCCTCATCCACCAGGGTGAGATGACGCGCATGGTTACCATTGCTGACAAAGCTCGTCTTGTT
AATGGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis