Browse Element(s) Details


OsAffx.10596.1.S1_at

Description gb:NM_184173.1
DB_XREF= gi:34895437
GEN=P0037C04.13
TID=OsAffx.10596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0037C04.13 (P0037C04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g141701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14130OsAffx.21897.5.S1_x_at2/116+7879382..7882327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14140NANA6+7882644..7888739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14150Os.31312.2.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14150Os.31312.5.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14160NANA6+7895480..7900970retrotransposon protein, putative, unclassified
LOC_Os06g14170OsAffx.4836.1.S1_at11/116+7905229..7906515hypothetical protein
LOC_Os06g14170OsAffx.10596.1.S1_at1/116+7905229..7906515hypothetical protein
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10596.1.S1_at--879--7231Chr01:1347411..1347435 (25 bp)
GTCCGACCGAAAAATTCGATCTCGT
NONE
OsAffx.10596.1.S1_at--512--5532Chr01:1347419..1347443 (25 bp)
GAAAAATTCGATCTCGTTCTTCGAT
NONE
OsAffx.10596.1.S1_at--604--6411Chr01:1347428..1347449 (22 bp)
GATCTCGTTCTTCGATTTTTCGAGG
NONE
OsAffx.10596.1.S1_at--888--10571Chr01:1347438..1347591 (25 bp)
TTCGATTTTTCGAGGCATCGCCGGC
NONE
OsAffx.10596.1.S1_at--191--3951NONE
CGGCAGTGGTGTGCGTCGGAATCTG
NONE
OsAffx.10596.1.S1_at--494--531Chr01:1348875..1348899 (25 bp)
ATCGCATCGCGTCTGCACATGCGCA
NONE
OsAffx.10596.1.S1_at--1045--4131Chr01:1348882..1348906 (25 bp)
CGCGTCTGCACATGCGCACGTGGTG
NONE
OsAffx.10596.1.S1_at--994--5771Chr01:1348923..1348947 (25 bp)
GACGAGCACAAGCACGTGCTACACG
NONE
OsAffx.10596.1.S1_at--209--2731Chr01:1348932..1348956 (25 bp)
AAGCACGTGCTACACGCATGCTCAG
NONE
OsAffx.10596.1.S1_at--256--1911Chr01:1348936..1348960 (25 bp)
ACGTGCTACACGCATGCTCAGCGGC
NONE
OsAffx.10596.1.S1_at--617--3751Chr01:1348952..1348976 (25 bp)
CTCAGCGGCCCAGCGAGTTGAGAGA
NONE
Target Sequence 
GTCCGACCGAAAAATTCGATCTCGTTCTTCGATTTTTCGAGGCATCGCCGGCGCGGTGGAGGGCGGAGGCGTCGGCTGCG
GCATGGTGGAGGACGGCGTTGTCGGCCACGGCGCGGTGGAGGACGGCGGCGTCGAACGCGGCGCGGTGGAGGATAGCGGC
GGCCGCCACGCGGTGGAGGCGGAGGCGGCGGCCGCGGCTCGGTGGAGGGCGGAGGCGGCGGCCGCGGCGCGGTGGAGGGC
GGAGGCAGGCCACGGCGCGATGGAGGGCGGAGGCGGCTGCAGCGACGCGGTGCAGGCTGGAGGAGGAGGCGGCTGCAGCG
ACGCGGTGCAGGCTGGAGGAGGAGGCGGCGCTGTGCGGCAGTGGTGTGCGTCGGAATCTGATCTCTGTACCAACTCTTCT
CTCCGCATCGCATCGCGTCTGCACATGCGCACGTGGTGCATGTATGGTCTGGTCGACGAGCACAAGCACGTGCTACACGC
ATGCTCAGCGGCCCAGCGAGTTGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis