Browse Element(s) Details


OsAffx.27630.1.S1_at

Description tigr:9634.m01418
TID=OsAffx.27630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1420011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14160NANA6+7895480..7900970retrotransposon protein, putative, unclassified
LOC_Os06g14170OsAffx.4836.1.S1_at11/116+7905229..7906515hypothetical protein
LOC_Os06g14170OsAffx.10596.1.S1_at1/116+7905229..7906515hypothetical protein
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein
LOC_Os06g14220Os.53026.1.S1_at10/116+7932985..7934242sulfotransferase family protein, putative, expressed
LOC_Os06g14230NANA6+7936672..7936926hypothetical protein
LOC_Os06g14240Os.9950.1.S1_at11/116+7939955..7940681Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250Os.35344.18.S1_x_at10/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250Os.35344.3.S1_x_at9/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250OsAffx.22940.5.S1_x_at3/116+7944053..7950099transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27630.1.S1_at--216--7111Chr06:7926331..7926355 (25 bp)
GTCACCCTGTGTTCTACTTAGCAAG
LOC_Os06g14200
OsAffx.27630.1.S1_at--900--8811Chr06:7925903..7925927 (25 bp)
TGTTGGTTGACTTATCCTTTTCTTC
LOC_Os06g14200
OsAffx.27630.1.S1_at--1061--10371Chr06:7925886..7925910 (25 bp)
TTTTCTTCCCAGTTGGCATCATACT
LOC_Os06g14200
OsAffx.27630.1.S1_at--438--6971Chr06:7925733..7925757 (25 bp)
GTAGCTGTGTTTTATTGCTTCCTGA
LOC_Os06g14200
OsAffx.27630.1.S1_at--950--4911Chr06:7925717..7925741 (25 bp)
GCTTCCTGAAGCAACTGGCAGAATT
LOC_Os06g14200
OsAffx.27630.1.S1_at--897--1371Chr06:7925683..7925707 (25 bp)
AGACCATCAAACAGTTCGGGATCAA
LOC_Os06g14200
OsAffx.27630.1.S1_at--577--2311Chr06:7925618..7925642 (25 bp)
AAAGGGTGGTTTTCAGCTATGGAGC
LOC_Os06g14200
OsAffx.27630.1.S1_at--1044--4071Chr06:7925573..7925597 (25 bp)
CGAGCATGTGCTCTTCAGAAGATAT
LOC_Os06g14200
OsAffx.27630.1.S1_at--458--2811Chr06:7925529..7925553 (25 bp)
AAGATCTGCTATGATGCTCCACGGA
LOC_Os06g14200
OsAffx.27630.1.S1_at--978--8031Chr06:7925507..7925531 (25 bp)
GGAGTTGCTTCTTCATACCCTGTGG
LOC_Os06g14200
OsAffx.27630.1.S1_at--666--10211Chr06:7924987..7925011 (25 bp)
TTTGCCGAAGGCTGATCCACAGAGT
LOC_Os06g14200
Target Sequence 
GTCACCCTGTGTTCTACTTAGCAAGTCCATGTGGAAGACTGGTGCTAATGAAGCTTTTGTTGGTTGACTTATCCTTTTCT
TCCCAGTTGGCATCATACTTTGTCATAATATGTGTTATAGTAGCTGTGTTTTATTGCTTCCTGAAGCAACTGGCAGAATT
TTCTGATACAGACCATCAAACAGTTCGGGATCAAGATGCAAGGAACAATGAAACAGAACCAATTCTACCAAGAAAAAGGG
TGGTTTTCAGCTATGGAGCGACGGAAGAGCAGCCTGAGTCGAGCATGTGCTCTTCAGAAGATATGTGCAGTGAGAATGTC
TGCAAGATCTGCTATGATGCTCCACGGAGTTGCTTCTTCATACCCTGTGGCCATGGTTTTGCATGTTTTACATGTGCAAG
GAGGATCGCGGAAGACAAAAATCAGGCATGCCCAATTTGCCGAAGGCTGATCCACAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis