Browse Element(s) Details


Os.53026.1.S1_at

Description gb:AK070507.1
DB_XREF= gi:32980531
TID=Os.53026.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full insert sequence.
FL= gb:AK070507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1422010/11sulfotransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein
LOC_Os06g14220Os.53026.1.S1_at10/116+7932985..7934242sulfotransferase family protein, putative, expressed
LOC_Os06g14230NANA6+7936672..7936926hypothetical protein
LOC_Os06g14240Os.9950.1.S1_at11/116+7939955..7940681Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250Os.35344.18.S1_x_at10/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250Os.35344.3.S1_x_at9/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250OsAffx.22940.5.S1_x_at3/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14260Os.46882.1.S1_at2/116+7952936..7955232Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53026.1.S1_at--233--10171Chr06:7933712..7933736 (25 bp)
TATACGGGCCGTTCTGGGATCACAT
LOC_Os06g14220
Os.53026.1.S1_at--962--2571Chr06:7933774..7933798 (25 bp)
AACGTGCTCTTCCTGCGGTACGAGG
LOC_Os06g14220
Os.53026.1.S1_at--1071--1871NONE
ACGAGGAGTTGCTGCGTGACCCTAC
NONE
Os.53026.1.S1_at--279--1931Chr06:7933885..7933909 (25 bp)
ACGGTTGAAGCCATCGTGGAGCTCT
LOC_Os06g14220
Os.53026.1.S1_at--902--2571Chr06:7933947..7933971 (25 bp)
AACGGGTTACGTTGATGCGCAGCGA
LOC_Os06g14220
Os.53026.1.S1_at--174--5571Chr06:7933970..7933994 (25 bp)
GAAAGATTCCACGTGAGACCCTTTT
LOC_Os06g14220
Os.53026.1.S1_at--317--8951Chr06:7934013..7934037 (25 bp)
TGACTGGGTGAACCACATGACGCCG
LOC_Os06g14220
Os.53026.1.S1_at--733--7511Chr06:7934053..7934077 (25 bp)
GTGGATGACATCGTCGCTGACAAGT
LOC_Os06g14220
Os.53026.1.S1_at--283--6811Chr06:7934076..7934100 (25 bp)
GTTTAGTGGCACAGGACTCACGTTT
LOC_Os06g14220
Os.53026.1.S1_at--996--3071Chr06:7934173..7934197 (25 bp)
AATACAACTATTTTCTCGCCGTTCA
LOC_Os06g14220
Os.53026.1.S1_at--493--4151Chr06:7934189..7934213 (25 bp)
CGCCGTTCACCCGATTGTATTAATT
LOC_Os06g14220
Target Sequence 
TATACGGGCCGTTCTGGGATCACATCCTCGGCTACTGGCACGCGAGCACCGAGGTGCCGGACAACGTGCTCTTCCTGCGG
TACGAGGAGTTGCTGCGTGACCCTACCGGGAACGTCCGGAAGATGGCGCGGTTCGTCGGGCTGCCGTTCTCCGAGGCGGA
GGAGGAAGCCGGCACGGTTGAAGCCATCGTGGAGCTCTGCAGCCTCGACCGTATGAGGGGATTCGAGGCGAACAGAACGG
GTTACGTTGATGCGCAGCGAAAGATTCCACGTGAGACCCTTTTCCGGAAGGGCGTGGTCGGTGACTGGGTGAACCACATG
ACGCCGGAGATGGCGCGCCGTGTGGATGACATCGTCGCTGACAAGTTTAGTGGCACAGGACTCACGTTTAAATGAGATTT
ACAGCTATGTGCAAACATAGATAGGTCAGTGAAGTTGCTTGTGAATAGAATGTATCTCGCAAATACAACTATTTTCTCGC
CGTTCACCCGATTGTATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis