Browse Element(s) Details


Os.17665.1.S1_x_at

Description gb:AK066448.1
DB_XREF= gi:32976466
TID=Os.17665.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31150 TF-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060O14, full insert sequence.
FL= gb:AK066448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1419011/11NF-X1 type zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14150Os.31312.2.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14150Os.31312.5.S1_x_at4/116+7891439..7894857retrotransposon protein, putative, unclassified
LOC_Os06g14160NANA6+7895480..7900970retrotransposon protein, putative, unclassified
LOC_Os06g14170OsAffx.4836.1.S1_at11/116+7905229..7906515hypothetical protein
LOC_Os06g14170OsAffx.10596.1.S1_at1/116+7905229..7906515hypothetical protein
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein
LOC_Os06g14220Os.53026.1.S1_at10/116+7932985..7934242sulfotransferase family protein, putative, expressed
LOC_Os06g14230NANA6+7936672..7936926hypothetical protein
LOC_Os06g14240Os.9950.1.S1_at11/116+7939955..7940681Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250Os.35344.18.S1_x_at10/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250Os.35344.3.S1_x_at9/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250OsAffx.22940.5.S1_x_at3/116+7944053..7950099transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.17665.1.S1_x_at--315--8351Chr06:7920243..7920267 (25 bp)
GGCGGCTACCAAGAGCAGTGCCAAT
LOC_Os06g14190
Os.17665.1.S1_x_at--892--8511Chr06:7920215..7920239 (25 bp)
TGGAAGAAGGCCACTGCCTCTGAGC
LOC_Os06g14190
Os.17665.1.S1_x_at--19--9071Chr06:7920160..7920184 (25 bp)
TGCTTGGTCAAGCTCCAGGATCAGT
LOC_Os06g14190
Os.17665.1.S1_x_at--380--8771Chr06:7920006..7920030 (25 bp)
TGTATCCAGCGCAGGGCCAAGTACT
LOC_Os06g14190
Os.17665.1.S1_x_at--320--1171Chr06:7919987..7920011 (25 bp)
AGTACTGCGCCACCGGTTAGTAAGA
LOC_Os06g14190
Os.17665.1.S1_x_at--215--10471Chr06:7919887..7919911 (25 bp)
TTACCTCCATTCAGATCCTTTTTTG
LOC_Os06g14190
Os.17665.1.S1_x_at--557--791Chr06:7919819..7919843 (25 bp)
ATGTGGTTCCTGATGAAGGCCCGCT
LOC_Os06g14190
Os.17665.1.S1_x_at--568--891Chr06:7919803..7919827 (25 bp)
AGGCCCGCTGACTGATCTGTTGTGA
LOC_Os06g14190
Os.17665.1.S1_x_at--16--2191Chr06:7919776..7919800 (25 bp)
ACACTGATCTTGTCATGCCGGCATC
LOC_Os06g14190
Os.17665.1.S1_x_at--892--7051Chr06:7919748..7919772 (25 bp)
GTAACGCTGCTGCTTCTTTTGCAGT
LOC_Os06g14190
Os.17665.1.S1_x_at--702--5011Chr06:7919728..7919752 (25 bp)
GCAGTCGTCCGTTCGAACTGAGGAA
LOC_Os06g14190
Target Sequence
GGCGGCTACCAAGAGCAGTGCCAATCCATGGAAGAAGGCCACTGCCTCTGAGCCTGATCCATCCTCAGGAGACTGGACAG
GTGTGCTTGGTCAAGCTCCAGGATCAGTATGGAGGCGTGGCGGTGACACTGTCGCCCAAGTCATGGGGACATCGAACCGC
TGGAACGCCCTGGAGTCCGATGCGGCCACAAGCTCCAGGCCAGTCGAGGAGAGTAAGCCTGCTCCTCGCACCGATGCTGT
ATCCAGCGCAGGGCCAAGTACTGCGCCACCGGTTAGTAAGATGCAGCCTGAAGTCGAAGTGGATGATTGGGAAGAAGCTT
GTGAATGAGTCATCAGGAAGCTAGGTTTCAGATGGTTTACCTCCATTCAGATCCTTTTTTGGTCGAATTTTATTTGCTAG
TACCAAATGTATCCTCACACTTTTATGTGGTTCCTGATGAAGGCCCGCTGACTGATCTGTTGTGAGCACACTGATCTTGT
CATGCCGGCATCCCTGTAACGCTGCTGCTTCTTTTGCAGTCGTCCGTTCGAACTGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17665.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis