Browse Element(s) Details


OsAffx.26723.1.S1_x_at

Description tigr:9633.m00334
TID=OsAffx.26723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0412011/11Ferroportin1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04040NANA5+1796062..1802013retrotransposon protein, putative, unclassified
LOC_Os05g04050OsAffx.14533.1.S1_at11/115+1804441..1804668hypothetical protein
LOC_Os05g04060OsAffx.14178.1.S1_x_at11/115+1806293..1808076expressed protein
LOC_Os05g04060Os.56241.1.S1_at11/115+1806293..1808076expressed protein
LOC_Os05g04070Os.22623.1.S1_x_at11/115+1808764..1811351expressed protein
LOC_Os05g04070Os.22623.1.S1_at10/115+1808764..1811351expressed protein
LOC_Os05g04080OsAffx.30733.1.S1_x_at1/115+1816193..1816851hypothetical protein
LOC_Os05g04090Os.22623.1.S1_x_at4/115+1818641..1819674hypothetical protein
LOC_Os05g04100NANA5+1820877..1821560hypothetical protein
LOC_Os05g04110NANA5+1822165..1822578hypothetical protein
LOC_Os05g04120OsAffx.26723.1.S1_x_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.26723.1.S1_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.4836.1.S1_at2/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04130NANA5+1827224..1827961hypothetical protein
LOC_Os05g04140NANA5+1829561..1829893hypothetical protein
LOC_Os05g04150Os.8084.1.S1_x_at11/115+1837693..1841560expressed protein
LOC_Os05g04150Os.37687.1.A1_at11/115+1837693..1841560expressed protein
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26723.1.S1_x_at--743--8371Chr05:1824861..1824885 (25 bp)
GGCGAGCCTCGCCTACGTGTTCGTC
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--1122--1891Chr05:1824847..1824871 (25 bp)
ACGTGTTCGTCTGCTTCAACGTCGC
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--409--3771Chr05:1824603..1824627 (25 bp)
CTCGTGAAGGAGCTCGGAATTCTCA
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--610--8071Chr05:1824595..1824619 (25 bp)
GGAGCTCGGAATTCTCAAGGCCGGA
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--739--9571Chr05:1824482..1824506 (25 bp)
TCTTCGCCTTCCTCGGATTGATCGT
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--1049--9251Chr05:1824393..1824497 (25 bp)
TCCTCGGATTGATCGTGGCGTCGAG
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--984--2111Chr05:1824360..1824384 (25 bp)
ACATGGCGTACAGCGCGATCGGGCT
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--1000--9011Chr05:1824327..1824351 (25 bp)
TGCAGACCGGGAACCCGGCGAGCAA
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--720--2611Chr05:1824316..1824340 (25 bp)
AACCCGGCGAGCAAGGCGAAGCTGA
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--125--1691Chr05:1824265..1824289 (25 bp)
AGCCTCGCCGAGCTCGCCATGATGG
LOC_Os05g04120
OsAffx.26723.1.S1_x_at--387--2991Chr05:1824158..1824182 (25 bp)
AATGTACTGCCGCTGGCTGGCCAAT
LOC_Os05g04120
Target Sequence 
GGCGAGCCTCGCCTACGTGTTCGTCTGCTTCAACGTCGCCCTCGCCCCCGGCGCGCTCATGACCACCTTCCTCATCCACC
AGGGCGTGAGGCCGTCGGTGATCGGCGCGTTCGGCGGCTCGTCGGGGGCGGTGGGGATCCTCGCGACGTTCGCGACGGCG
AGGCTCGTGAAGGAGCTCGGAATTCTCAAGGCCGGAGCGGCCGGTCTGATCGCCCAGAGCGCGCTCCTCGGCGCCGCGGT
CGTCGTCTACCTCACCGGCGCCGTCTCACGGCGAGCCGGCGCGCTCTTCGCCTTCCTCGGATTGATCGTGGCGTCGAGGG
CGGGGCACATGGCGTACAGCGCGATCGGGCTGCAGGTGGTGCAGACCGGGAACCCGGCGAGCAAGGCGAAGCTGATCGGC
GCCACGGAGATCGCCGTCGCCAGCCTCGCCGAGCTCGCCATGATGGCCGTGGCGGTGGTCGCCAGCGACGCCTCGCACTT
CGGCGCACTGGCCGCGCTCTCTGCCACTGCCGTCACCGCCGCCGCCGGAATGTACTGCCGCTGGCTGGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26723.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis