Browse Element(s) Details


Os.8084.1.S1_x_at

Description gb:AK065049.1
DB_XREF= gi:32975067
TID=Os.8084.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001I13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001I13, full insert sequence.
FL= gb:AK065049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0415011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04080OsAffx.30733.1.S1_x_at1/115+1816193..1816851hypothetical protein
LOC_Os05g04090Os.22623.1.S1_x_at4/115+1818641..1819674hypothetical protein
LOC_Os05g04100NANA5+1820877..1821560hypothetical protein
LOC_Os05g04110NANA5+1822165..1822578hypothetical protein
LOC_Os05g04120OsAffx.26723.1.S1_x_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.26723.1.S1_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.4836.1.S1_at2/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04130NANA5+1827224..1827961hypothetical protein
LOC_Os05g04140NANA5+1829561..1829893hypothetical protein
LOC_Os05g04150Os.8084.1.S1_x_at11/115+1837693..1841560expressed protein
LOC_Os05g04150Os.37687.1.A1_at11/115+1837693..1841560expressed protein
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8084.1.S1_x_at--264--7391Chr05:1840538..1840562 (25 bp)
GTGAGCTTCCATGGATCACCTGAAT
LOC_Os05g04150
Os.8084.1.S1_x_at--895--6431Chr05:1840551..1840575 (25 bp)
GATCACCTGAATCGTCCGTTAGAGC
LOC_Os05g04150
Os.8084.1.S1_x_at--737--1371Chr05:1840571..1840595 (25 bp)
AGAGCGCATAGCAGTCTGATCTCCA
LOC_Os05g04150
Os.8084.1.S1_x_at--346--3871Chr05:1840586..1840610 (25 bp)
CTGATCTCCATTCGGTTCTACAAGA
LOC_Os05g04150
Os.8084.1.S1_x_at--579--5271Chr05:1840881..1840905 (25 bp)
GAATGCTGAGACACCATCGAGGCTG
LOC_Os05g04150
Os.8084.1.S1_x_at--241--391Chr05:1840930..1840954 (25 bp)
ATCACGAGATGAACATTGCGCCCCG
LOC_Os05g04150
Os.8084.1.S1_x_at--201--2511Chr05:1840999..1841023 (25 bp)
AACTTGGCCATTTTGAAACCTCATC
LOC_Os05g04150
Os.8084.1.S1_x_at--509--1471Chr05:1841047..1841071 (25 bp)
AGAATTTCAGTGCTTCTCGAGGCCG
LOC_Os05g04150
Os.8084.1.S1_x_at--32--6231Chr05:1841065..1841089 (25 bp)
GAGGCCGTCCTCACTGTAAATGATG
LOC_Os05g04150
Os.8084.1.S1_x_at--731--8771Chr05:1841226..1841250 (25 bp)
TGTTTGGCCCTGTAATGCTGCATCT
LOC_Os05g04150
Os.8084.1.S1_x_at--556--2871Chr05:1841269..1841293 (25 bp)
AAGTGTGTGTTCTTGGCTGTTCATC
LOC_Os05g04150
Target Sequence 
GTGAGCTTCCATGGATCACCTGAATCGTCCGTTAGAGCGCATAGCAGTCTGATCTCCATTCGGTTCTACAAGAACAATAA
TTNTAATAGCAGATCTCGAGAGGCCATATCGGCAGCTCCCAAGAATGCTGAGACACCATCGAGGCTGGAGATCCATAGCA
AAGCAAGAAAGATCACGAGATGAACATTGCGCCCCGAGCATGATCCGCCATCCATGATTGCCGTCGCCGCAATGCCTCCC
AACTTGGCCATTTTGAAACCTCATCACGTCAGGTTGATGTAAATTATGAGAATTTCAGTGCTTCTCGAGGCCGTCCTCAC
TGTAAATGATGAACTACTCTTTTAGTGTGGGTGTGTGCCCCCCTCTCTGGGTTNTATGCTAACCAGTGGTGGTAAGAGCA
AGCTGTCTTGTTACAATAATAATAAAATGTTGCTCTTAATAATAGTAGTATGATCTAGTCTAATTACTGTTTGGCCCTGT
AATGCTGCATCTGGTAGCAATAAAAATCAGAAGTGTGTGTTCTTGGCTGTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8084.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis