Browse Element(s) Details


Os.16028.1.S1_at

Description gb:AK058597.1
DB_XREF= gi:32968615
TID=Os.16028.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H04, full insert sequence.
FL= gb:AK058597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0418011/11Agenet domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04150Os.8084.1.S1_x_at11/115+1837693..1841560expressed protein
LOC_Os05g04150Os.37687.1.A1_at11/115+1837693..1841560expressed protein
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed
LOC_Os05g04200OsAffx.26726.1.S1_at7/115+1877124..1879153hypothetical protein
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16028.1.S1_at--330--9771Chr05:1863542..1863566 (25 bp)
TAAGGCTTACGAGGTGCACGCACAA
LOC_Os05g04180
Os.16028.1.S1_at--665--8531Chr05:1863514..1863538 (25 bp)
TGTGCAGAAGTGTGGGTTAGTACCC
LOC_Os05g04180
Os.16028.1.S1_at--67--5291Chr05:1863485..1863509 (25 bp)
GAATGTGCTTCGCTAACATCATCCT
LOC_Os05g04180
Os.16028.1.S1_at--144--8991Chr05:1863422..1863446 (25 bp)
TGAATGACCTTTCTTCGTCTGCAAC
LOC_Os05g04180
Os.16028.1.S1_at--920--2531Chr05:1863400..1863424 (25 bp)
AACTCCACCAGCAGTTGATCTGAAT
LOC_Os05g04180
Os.16028.1.S1_at--42--2971Chr05:1863368..1863392 (25 bp)
AATGGGAGATCCTCAGCGTCACTAA
LOC_Os05g04180
Os.16028.1.S1_at--406--4651Chr05:1863353..1863377 (25 bp)
GCGTCACTAATAAGCTTTGGCATTT
LOC_Os05g04180
Os.16028.1.S1_at--163--10311Chr05:1863330..1863354 (25 bp)
TTTCTGTAGATCTGAACATGCTTCT
LOC_Os05g04180
Os.16028.1.S1_at--258--10451Chr05:1863271..1863295 (25 bp)
TTAGGGTGACATAACTCTTATTTCA
LOC_Os05g04180
Os.16028.1.S1_at--335--5931Chr05:1863237..1863261 (25 bp)
GAGCATATGCTTTCTATGTTTGAGA
LOC_Os05g04180
Os.16028.1.S1_at--500--271Chr05:1863213..1863237 (25 bp)
ATATGTTTTTAGTTCTGCATTCAAA
LOC_Os05g04180
Target Sequence 
TAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCNAAAGAATGTGCTTCGCTAACATCATC
CTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGA
TCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATA
ATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCANGACTACATGAGCATATGCTTTCT
ATGTTTGAGATATGTTTTTAGTTCTGCATTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis