Browse Element(s) Details


OsAffx.14535.1.S1_at

Description tigr:9633.m00338
TID=OsAffx.14535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0416011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04090Os.22623.1.S1_x_at4/115+1818641..1819674hypothetical protein
LOC_Os05g04100NANA5+1820877..1821560hypothetical protein
LOC_Os05g04110NANA5+1822165..1822578hypothetical protein
LOC_Os05g04120OsAffx.26723.1.S1_x_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.26723.1.S1_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.4836.1.S1_at2/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04130NANA5+1827224..1827961hypothetical protein
LOC_Os05g04140NANA5+1829561..1829893hypothetical protein
LOC_Os05g04150Os.8084.1.S1_x_at11/115+1837693..1841560expressed protein
LOC_Os05g04150Os.37687.1.A1_at11/115+1837693..1841560expressed protein
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14535.1.S1_at--577--2591Chr05:1844016..1844040 (25 bp)
AACGAGTTGCTTCATGGCCTTTTCA
LOC_Os05g04160
OsAffx.14535.1.S1_at--1136--2751Chr05:1844056..1844080 (25 bp)
AAGACGCTTTTGCAATGGTGATTGA
LOC_Os05g04160
OsAffx.14535.1.S1_at--794--3171Chr05:1844133..1844157 (25 bp)
AATTGTCTGTGTCAAATGTGCATGA
LOC_Os05g04160
OsAffx.14535.1.S1_at--679--131Chr05:1844202..1844226 (25 bp)
ATTCAACCTGATGCATTCACTTTCA
LOC_Os05g04160
OsAffx.14535.1.S1_at--31--1211Chr05:1844265..1844289 (25 bp)
AGTATTGCTGCTTGTCTATTGGGAC
LOC_Os05g04160
OsAffx.14535.1.S1_at--626--1111Chr05:1844300..1844324 (25 bp)
AGTGAACTGCCCACGCAACGTAGTT
LOC_Os05g04160
OsAffx.14535.1.S1_at--386--2591Chr05:1844316..1844340 (25 bp)
AACGTAGTTGCGTATACCATTCTGA
LOC_Os05g04160
OsAffx.14535.1.S1_at--660--111Chr05:1844334..1844358 (25 bp)
ATTCTGATTTCAGAGCTTTGCAATC
LOC_Os05g04160
OsAffx.14535.1.S1_at--510--7831Chr05:1844361..1844385 (25 bp)
GGTAAGCTATCAAATGCCATGGTTT
LOC_Os05g04160
OsAffx.14535.1.S1_at--522--3031Chr05:1844373..1844397 (25 bp)
AATGCCATGGTTTACCTCTTAAAGA
LOC_Os05g04160
OsAffx.14535.1.S1_at--512--7391Chr05:1844439..1844463 (25 bp)
GTGTTGGTTCGTGCAATTTTTACAA
LOC_Os05g04160
Target Sequence 
AACGAGTTGCTTCATGGCCTTTTCAGAGAAGGAAATCACAAAGACGCTTTTGCAATGGTGATTGAGATGCTTAACAATGG
GTTTGAGTTAAGTCTAGTAACTTACAACACAGTGATTAATTGTCTGTGTCAAATGTGCATGAGGAAACATGCTATGTTGC
TTCTGGGGAGGATGATGGTTCAAGGAATTCAACCTGATGCATTCACTTTCAATGCGATAATTCATGCTTATTGCAAGGAA
GGGAAGGTCAGTATTGCTGCTTGTCTATTGGGACAAATGAATGCAGTGAACTGCCCACGCAACGTAGTTGCGTATACCAT
TCTGATTTCAGAGCTTTGCAATCAGGGTAAGCTATCAAATGCCATGGTTTACCTCTTAAAGATGTTATATGAAGGTATTT
GTCCGAATGAAGCAACATGGAATGTGTTGGTTCGTGCAATTTTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis