Browse Element(s) Details


Os.12650.2.S1_a_at

Description gb:AK101989.1
DB_XREF= gi:32987198
TID=Os.12650.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079D11, full insert sequence.
FL= gb:AK101989.1 gb:AK100056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4722011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein
LOC_Os02g47240OsAffx.24762.1.S1_at11/112+28828065..28828475hypothetical protein
LOC_Os02g47250NANA2+28829205..28832269hypothetical protein
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified
LOC_Os02g47270OsAffx.20387.1.S1_x_at1/112+28838828..28843028transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12650.2.S1_a_at--298--8891Chr02:28817502..28817526 (25 bp)
TGAGGAATGCATGAGTCTACGTGAA
LOC_Os02g47220
Os.12650.2.S1_a_at--186--2851Chr02:28817600..28817619 (20 bp)
AAGTAAAGTCTTTGCGGCGCATGAA
LOC_Os02g47220
Os.12650.2.S1_a_at--408--8391Chr02:28817610..28817634 (25 bp)
GGCGCATGAATCACCCTAACATCGT
LOC_Os02g47220
Os.12650.2.S1_a_at--260--8031Chr02:28817769..28817793 (25 bp)
GGAGTGCAATCTCTACCAACTTATG
LOC_Os02g47220
Os.12650.2.S1_a_at--103--7951Chr02:28817796..28817820 (25 bp)
GGATAGAGTCAAGCCTTTCTCAGAG
LOC_Os02g47220
Os.12650.2.S1_a_at--787--5031Chr02:28817821..28817845 (25 bp)
GCAGAAGTCCGGAATTGGTGCTTTC
LOC_Os02g47220
Os.12650.2.S1_a_at--240--8611Chr02:28817836..28817860 (25 bp)
TGGTGCTTTCAGATTTTTCAGGCTC
LOC_Os02g47220
Os.12650.2.S1_a_at--19--10371Chr02:28817849..28817873 (25 bp)
TTTTTCAGGCTCTTGCATACATGCA
LOC_Os02g47220
Os.12650.2.S1_a_at--434--7611Chr02:28817880..28817904 (25 bp)
GGGTTACTTTCATCGTGACCTGAAA
LOC_Os02g47220
Os.12650.2.S1_a_at--1106--331Chr02:28818187..28818211 (25 bp)
ATAAAGCTGGCGGACTTTGGTCTTG
LOC_Os02g47220
Os.12650.2.S1_a_at--134--2871Chr02:28818213..28818237 (25 bp)
AAGGGAAGTTACATCCGTGCCACCA
LOC_Os02g47220
Target Sequence 
TGAGGAATGCATGAGTCTACGTGAAGTAAAGTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTA
TAAGGGAAAATGACATATTATACTTCATAATGGAATACATGGAGTGCAATCTCTACCAACTTATGAAGGATAGAGTCAAG
CCTTTCTCAGAGGCAGAAGTCCGGAATTGGTGCTTTCAGATTTTTCAGGCTCTTGCATACATGCACCAGAGGGGTTACTT
TCATCGTGACCTGAAACCTGAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAG
TTACATCCGTGCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12650.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis