Browse Element(s) Details


Os.24699.1.S1_at

Description gb:AK059448.1
DB_XREF= gi:32969466
TID=Os.24699.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A10, full insert sequence.
FL= gb:AK059448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4719011/11Calcium-dependent protein kinase substrate protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein
LOC_Os02g47240OsAffx.24762.1.S1_at11/112+28828065..28828475hypothetical protein
LOC_Os02g47250NANA2+28829205..28832269hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24699.1.S1_at--732--311Chr02:28805507..28805531 (25 bp)
ATACCTGCAGACGATACTGGAGAAA
LOC_Os02g47190
Os.24699.1.S1_at--120--5551Chr02:28805528..28805552 (25 bp)
GAAAGCCCAGAACAACCTCTCCTAT
LOC_Os02g47190
Os.24699.1.S1_at--496--2371Chr02:28805570..28805594 (25 bp)
AAACCTCGAAGCAACCAGAACGCAG
LOC_Os02g47190
Os.24699.1.S1_at--433--1431Chr02:28805586..28805610 (25 bp)
AGAACGCAGCTTACAGATTTCAACC
LOC_Os02g47190
Os.24699.1.S1_at--1137--1251Chr02:28805600..28805624 (25 bp)
AGATTTCAACCTGGCTCTTTCAGGA
LOC_Os02g47190
Os.24699.1.S1_at--887--5191Chr02:28805734..28805758 (25 bp)
GAATTCAGGATTCCGACGATGTCAA
LOC_Os02g47190
Os.24699.1.S1_at--801--4091Chr02:28805747..28805771 (25 bp)
CGACGATGTCAAGTGTTCTCAAGAT
LOC_Os02g47190
Os.24699.1.S1_at--129--6311Chr02:28805769..28805793 (25 bp)
GATGAGGGCTTACTGCTGCTAGATT
LOC_Os02g47190
Os.24699.1.S1_at--574--3031Chr02:28805832..28805856 (25 bp)
AATGCCATGCGAGGCGGCGAATCCG
LOC_Os02g47190
Os.24699.1.S1_at--32--3931Chr02:28805846..28805870 (25 bp)
CGGCGAATCCGGTCTGAAGATTAGT
LOC_Os02g47190
Os.24699.1.S1_at--981--5331Chr02:28805861..28805885 (25 bp)
GAAGATTAGTCAGCACAGGAGGTAA
LOC_Os02g47190
Target Sequence 
ATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGNAAACCTCGAAGCAACCA
GAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACANTGGA
GAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCNAGGCTTTCAGCTCTACCATGGAATTCAGGATTC
CGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGNCCATCTGT
CCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis