Browse Element(s) Details


OsAffx.24762.1.S1_at

Description tigr:9630.m04595
TID=OsAffx.24762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4724011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein
LOC_Os02g47240OsAffx.24762.1.S1_at11/112+28828065..28828475hypothetical protein
LOC_Os02g47250NANA2+28829205..28832269hypothetical protein
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified
LOC_Os02g47270OsAffx.20387.1.S1_x_at1/112+28838828..28843028transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24762.1.S1_at--183--4271Chr02:28828098..28828122 (25 bp)
CCTGGGAAGAAGGTCGCGGCAGCGT
LOC_Os02g47240
OsAffx.24762.1.S1_at--782--8111Chr02:28828132..28828156 (25 bp)
GGACGTGTGTTTCCGCCGAGACTGG
LOC_Os02g47240
OsAffx.24762.1.S1_at--590--7411Chr02:28828180..28828204 (25 bp)
GTGTTGGAAGGCGACATCCCGGCAA
LOC_Os02g47240
OsAffx.24762.1.S1_at--364--8511Chr02:28828184..28828208 (25 bp)
TGGAAGGCGACATCCCGGCAATGTC
LOC_Os02g47240
OsAffx.24762.1.S1_at--724--3871Chr02:28828199..28828223 (25 bp)
CGGCAATGTCGGCTGTTCCAAAATT
LOC_Os02g47240
OsAffx.24762.1.S1_at--383--771Chr02:28828204..28828228 (25 bp)
ATGTCGGCTGTTCCAAAATTAGTAC
LOC_Os02g47240
OsAffx.24762.1.S1_at--1042--3231Chr02:28828217..28828241 (25 bp)
CAAAATTAGTACTACAACGCTTGTT
LOC_Os02g47240
OsAffx.24762.1.S1_at--79--7011Chr02:28828225..28828249 (25 bp)
GTACTACAACGCTTGTTTATGGAAC
LOC_Os02g47240
OsAffx.24762.1.S1_at--41--1851Chr02:28828233..28828257 (25 bp)
ACGCTTGTTTATGGAACTTGTCGAC
LOC_Os02g47240
OsAffx.24762.1.S1_at--69--851Chr02:28828243..28828432 (25 bp)
ATGGAACTTGTCGACAGGTTATAAA
LOC_Os02g47240
OsAffx.24762.1.S1_at--1114--7194Chr12:8916285..8916305 (21 bp)
GTCGACAGGTTATAAAGGGAACAAT
NONE
Target Sequence 
CCTGGGAAGAAGGTCGCGGCAGCGTGGGTGTCGGGGACGTGTGTTTCCGCCGAGACTGGCAGCGAGGACGGTGGCGGTTT
TGGTGTTGGAAGGCGACATCCCGGCAATGTCGGCTGTTCCAAAATTAGTACTACAACGCTTGTTTATGGAACTTGTCGAC
AGGTTATAAAGGGAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis