Browse Element(s) Details


Os.18563.1.S1_x_at

Description gb:AK062786.1
DB_XREF= gi:32972804
TID=Os.18563.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B09, full insert sequence.
FL= gb:AK062786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4713011/11expressed protein
LOC_Os07g307741/11CG-1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18563.1.S1_x_at--753--8471Chr02:28765716..28765740 (25 bp)
TGGCGCTTGCAGAGCTGGACGACAA
LOC_Os02g47130
Os.18563.1.S1_x_at--247--8091Chr02:28765788..28765812 (25 bp)
GGAGCTGCAAAACCCAATGCCATAT
LOC_Os02g47130
Os.18563.1.S1_x_at--1159--3731Chr02:28765856..28765880 (25 bp)
CTAAGGCTTCGTCTTGCTGGCGTGA
LOC_Os02g47130
Os.18563.1.S1_x_at--434--10711Chr02:28765869..28765893 (25 bp)
TTGCTGGCGTGAGTACCCAAGTTTT
LOC_Os02g47130
Os.18563.1.S1_x_at--968--9771Chr02:28765857..28765881 (25 bp)
TAAGGCTTCGTCTTGCTGGCGTGAG
LOC_Os02g47130
Os.18563.1.S1_x_at--23--4011Chr02:28765984..28766008 (25 bp)
CGTGAGTGCCCAAGTTTTCGTGTGT
LOC_Os02g47130
Os.18563.1.S1_x_at--1020--6832Chr02:28766040..28766064 (25 bp)
GTTTCTCTGAACAACCTGCAGTTTG
LOC_Os02g47130
Os.18563.1.S1_x_at--160--1211Chr02:28766059..28766083 (25 bp)
AGTTTGCGTTGGTTCTCTCTGTTTC
LOC_Os02g47130
Os.18563.1.S1_x_at--102--7491Chr02:28766094..28766118 (25 bp)
GTGGTCGTTTTGTGTCTTTGTATCC
LOC_Os02g47130
Os.18563.1.S1_x_at--801--10251Chr02:28766110..28766134 (25 bp)
TTTGTATCCGTTCCGTGCTGAGACT
LOC_Os02g47130
Os.18563.1.S1_x_at--891--7251Chr02:28766124..28766148 (25 bp)
GTGCTGAGACTCTGGCTTGGTTAAG
LOC_Os02g47130
Target Sequence 
TGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGC
AAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGG
CGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCNAAGTTTTAGTTGTG
AAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAA
CCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGT
ATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18563.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis