Browse Element(s) Details


OsAffx.24760.1.S1_at

Description tigr:9630.m04580
TID=OsAffx.24760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed
LOC_Os02g47070OsAffx.12533.1.S1_at11/112+28732333..28733209hypothetical protein
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24760.1.S1_at--917--9511Chr02:28747566..28747590 (25 bp)
TCTCTTTCTCAATCCACGTCAAGGT
LOC_Os02g47100
OsAffx.24760.1.S1_at--458--1891Chr02:28747581..28747605 (25 bp)
ACGTCAAGGTGGACCGCGTCCGTGT
LOC_Os02g47100
OsAffx.24760.1.S1_at--248--4431Chr02:28747612..28747636 (25 bp)
GCCAGGAGCCGCTTGTGCTCGTCAT
LOC_Os02g47100
OsAffx.24760.1.S1_at--699--9451Chr02:28747638..28747662 (25 bp)
TCGGCGCACGCAGCAAGCGGTCTAG
LOC_Os02g47100
OsAffx.24760.1.S1_at--898--3231Chr02:28747651..28747675 (25 bp)
CAAGCGGTCTAGGTGTCGACGCATT
LOC_Os02g47100
OsAffx.24760.1.S1_at--110--1051Chr02:28747661..28747685 (25 bp)
AGGTGTCGACGCATTGCCGAGTCCA
LOC_Os02g47100
OsAffx.24760.1.S1_at--380--5691Chr02:28747772..28747796 (25 bp)
GACTACGAGGAAGGCTCACGACTCT
LOC_Os02g47100
OsAffx.24760.1.S1_at--723--5291Chr02:28747781..28747805 (25 bp)
GAAGGCTCACGACTCTGGTGCTGCT
LOC_Os02g47100
OsAffx.24760.1.S1_at--518--5771Chr02:28747867..28747891 (25 bp)
GACGAAACCTACACAGAGCCACACG
LOC_Os02g47100
OsAffx.24760.1.S1_at--571--8351Chr02:28747891..28747915 (25 bp)
GGCGGCGCGCTCGAAGCAATCAAAC
LOC_Os02g47100
OsAffx.24760.1.S1_at--457--5191Chr02:28747906..28747930 (25 bp)
GCAATCAAACCAACAAGCAGCCGTC
LOC_Os02g47100
Target Sequence 
TCTCTTTCTCAATCCACGTCAAGGTGGACCGCGTCCGTGTCGCCGCGCCAGGAGCCGCTTGTGCTCGTCATCTCGGCGCA
CGCAGCAAGCGGTCTAGGTGTCGACGCATTGCCGAGTCCAACCCGCACACGCCGCCGATGAAGAAGAAGAAGAAGGCCAA
GAAGCCGGCCGCCTCTGACGCCGAGGCCGACGCGGACGCGGACGCCGACTACGAGGAAGGCTCACGACTCTGGTGCTGCT
GCCGCCGCCGCCATTTCTATCCCTTTCCCCTCCCCTCCACGACTCCGCTGCCGCCGCCGCCGACGAAACCTACACAGAGC
CACACGGCGGCGCGCTCGAAGCAATCAAACCAACAAGCAGCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis