Browse Element(s) Details


OsAffx.12533.1.S1_at

Description tigr:9630.m04577
TID=OsAffx.12533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4707011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed
LOC_Os02g47070OsAffx.12533.1.S1_at11/112+28732333..28733209hypothetical protein
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12533.1.S1_at--369--1751Chr02:28732961..28733016 (25 bp)
ACCTCCAAATCCGTCGCGAGGTCGG
LOC_Os02g47070
OsAffx.12533.1.S1_at--1107--9431Chr02:28732940..28732964 (25 bp)
TCGGCAGTTGAGTATGGTGTGAGGA
LOC_Os02g47070
OsAffx.12533.1.S1_at--971--5272Chr11:2973236..2973311 (25 bp)
GAATGGCTCGGTTTGGAGGTCCTCC
NONE
OsAffx.12533.1.S1_at--758--2952Chr11:2973235..2973310 (25 bp)
AATGGCTCGGTTTGGAGGTCCTCCA
NONE
OsAffx.12533.1.S1_at--579--6152Chr03:23340537..23340561 (25 bp)
GAGGTCCTCCAAAAATGGCGTGTGT
NONE
OsAffx.12533.1.S1_at--704--7252Chr03:23340540..23340564 (25 bp)
GTCCTCCAAAAATGGCGTGTGTGAT
NONE
OsAffx.12533.1.S1_at--930--4653Chr03:23340554..23340578 (25 bp)
GCGTGTGTGATGGAAGGTCTGCTGG
NONE
OsAffx.12533.1.S1_at--733--1531Chr02:28732833..28732857 (25 bp)
AGCATTGTTTTTCACCTCCATGCGT
LOC_Os02g47070
OsAffx.12533.1.S1_at--207--10791Chr02:28732829..28732853 (25 bp)
TTGTTTTTCACCTCCATGCGTCAAA
LOC_Os02g47070
OsAffx.12533.1.S1_at--839--6811Chr02:28732827..28732851 (25 bp)
GTTTTTCACCTCCATGCGTCAAAAA
LOC_Os02g47070
OsAffx.12533.1.S1_at--80--10331Chr02:28732824..28732848 (25 bp)
TTTCACCTCCATGCGTCAAAAAGGG
LOC_Os02g47070
Target Sequence 
ACCTCCAAATCCGTCGCGAGGTCGGCAGTTGAGTATGGTGTGAGGAGAGAGAACCTCCATATTTGGCTTGGGAATGGCTC
GGTTTGGAGGTCCTCCAAAAATGGCGTGTGTGATGGAAGGTCTGCTGGAGCATTGTTTTTCACCTCCATGCGTCAAAAAG
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis