Browse Element(s) Details


OsAffx.23312.1.S1_s_at

Description gb:NM_183674.1
DB_XREF= gi:34894475
GEN=OJ1116_C07.1
TID=OsAffx.23312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1116_C07.1 (OJ1116_C07.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2077011/11hypothetical protein
LOC_Os02g469802/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20750NANA1+11541752..11542409hypothetical protein
LOC_Os01g20760OsAffx.22940.2.S1_s_at8/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760Os.35344.18.S1_x_at7/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760Os.35344.3.S1_x_at6/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.3.S1_x_at6/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.5.S1_x_at4/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.1.S1_s_at2/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20770OsAffx.23312.1.S1_s_at11/111+11563494..11564331hypothetical protein
LOC_Os01g20770Os.5377.2.S1_x_at1/111+11563494..11564331hypothetical protein
LOC_Os01g20780Os.40421.1.S1_at9/111+11568088..11568986expressed protein
LOC_Os01g20800NANA1+11573707..11573958hypothetical protein
LOC_Os01g20810OsAffx.11130.1.S1_at11/111+11578112..11578815hypothetical protein
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23312.1.S1_s_at--1061--1611Chr01:11564263..11564287 (25 bp)
AGCTGGCATGCTGCCATTTGCCACT
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--863--9171Chr01:11564252..11564276 (25 bp)
TGCCATTTGCCACTGTGCACGTCTG
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--452--10291Chr01:11564247..11564271 (25 bp)
TTTGCCACTGTGCACGTCTGCATCG
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--1115--3352Chr02:28677902..28677923 (22 bp)
CACCAGGTCGGGATCGCCGCGAGTC
LOC_Os02g46980
OsAffx.23312.1.S1_s_at--260--7611Chr01:11563977..11564001 (25 bp)
GGGAAGGGATCACCGGGCGCCATGC
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--551--5291Chr01:11563932..11563956 (25 bp)
GAAGGCGCACGCGCGACACGTCAAG
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--432--8071Chr01:11563834..11563858 (25 bp)
GGAGCATGGCCTACGCGGCGTCCAT
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--433--3931Chr01:11563804..11563828 (25 bp)
CGGCGCTCGACGACCCTGAGGCGTT
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--487--5811Chr01:11563793..11563817 (25 bp)
GACCCTGAGGCGTTCGACTACAACA
LOC_Os01g20770
OsAffx.23312.1.S1_s_at--629--6212Chr02:28677644..28677668 (25 bp)
GAGGCGTTCGACTACAACACCCTGA
LOC_Os02g46980
OsAffx.23312.1.S1_s_at--129--9191Chr01:11563652..11563676 (25 bp)
TGCCTGCCGCCCATGAGAGAGAGGA
LOC_Os01g20770
Target Sequence 
AGCTGGCATGCTGCCATTTGCCACTGTGCACGTCTGCATCGTCCGCCAACGAGCACCACCAGGTCGGGATCGCCGCGAGT
CGCCGGCGCAGGCGCAAGTGGCGGAGCAGGCCGCCTTCAGGGGAAGGGATCACCGGGCGCCATGCGAGAGCCTGGACGAG
GCGAGGAAGGCGCACGCGCGACACGTCAAGCTCGGCGTCGACCGCTCGCTGCGGCACGCGCGGCCGCTCCTCGCGGCGTG
CGCGCTCGCCGCCGACTGGCCCGGGAGCATGGCCTACGCGGCGTCCATCTTCGCGGCGCTCGACGACCCTGAGGCGTTCG
ACTACAACACCCTGACGCGCGACTACTCCGCGTCACCCGCCGCTGCCGCCCCCGCCGCCGCTCTGTCCCTCGCCTGCCAC
CGCCGCCTCCGCGTCACCCGCCGAGGCCGACGCTGCTCTGTCCCCTGCCTGCCGCCCATGAGAGAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23312.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis