Browse Element(s) Details


Os.5377.1.S1_at

Description gb:AK105891.1
DB_XREF= gi:32991100
TID=Os.5377.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E07, full insert sequence.
FL= gb:AK105891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4698011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5377.1.S1_at--61--1951Chr02:28676373..28676397 (25 bp)
ACGGCGCGACGCACCGGTTCGTGTC
LOC_Os02g46980
Os.5377.1.S1_at--225--1851Chr02:28676365..28676389 (25 bp)
ACGCACCGGTTCGTGTCGCAGGACA
LOC_Os02g46980
Os.5377.1.S1_at--659--6711Chr02:28676357..28676381 (25 bp)
GTTCGTGTCGCAGGACAGGTCGCAC
LOC_Os02g46980
Os.5377.1.S1_at--80--7451Chr02:28676353..28676377 (25 bp)
GTGTCGCAGGACAGGTCGCACCCGC
LOC_Os02g46980
Os.5377.1.S1_at--930--931Chr02:28676346..28676370 (25 bp)
AGGACAGGTCGCACCCGCGGGCGGA
LOC_Os02g46980
Os.5377.1.S1_at--530--8111Chr02:28676324..28676348 (25 bp)
GGACGACATCTACGAGATGCTGCAC
LOC_Os02g46980
Os.5377.1.S1_at--635--2091Chr02:28676319..28676343 (25 bp)
ACATCTACGAGATGCTGCACCAGAT
LOC_Os02g46980
Os.5377.1.S1_at--281--9951Chr02:28676314..28676338 (25 bp)
TACGAGATGCTGCACCAGATGGAGT
LOC_Os02g46980
Os.5377.1.S1_at--934--1291Chr02:28676310..28676334 (25 bp)
AGATGCTGCACCAGATGGAGTGGCA
LOC_Os02g46980
Os.5377.1.S1_at--664--9031Chr02:28676304..28676328 (25 bp)
TGCACCAGATGGAGTGGCAGCTCCG
LOC_Os02g46980
Os.5377.1.S1_at--422--7031Chr02:28676270..28676294 (25 bp)
GTACACGCCCGACACGTCGGAGCTG
LOC_Os02g46980
Target Sequence 
ACGGCGCGACGCACCGGTTCGTGTCGCAGGACAGGTCGCACCCGCGGGCGGACGACATCTACGAGATGCTGCACCAGATG
GAGTGGCAGCTCCGGTTCGAGGGGTACACGCCCGACACGTCGGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis