Browse Element(s) Details


Os.37986.1.S1_at

Description gb:AK102993.1
DB_XREF= gi:32988202
TID=Os.37986.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116E03, full insert sequence.
FL= gb:AK102993.1 gb:AK059475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4695611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37986.1.S1_at--611--6311Chr02:28665288..28665312 (25 bp)
GATGACTGCTGAAGGTGCCATGAAT
LOC_Os02g46956
Os.37986.1.S1_at--619--251Chr02:28665328..28665352 (25 bp)
ATATCTGGAGACTTGGGCTCCTTTC
LOC_Os02g46956
Os.37986.1.S1_at--1043--8311Chr02:28665343..28665602 (25 bp)
GGCTCCTTTCCAAGAACAGACGCTG
LOC_Os02g46956
Os.37986.1.S1_at--1084--6491Chr02:28665662..28665686 (25 bp)
GATAGTGATCTTGCTGTTGTCTTAA
LOC_Os02g46956
Os.37986.1.S1_at--306--7691Chr02:28665704..28665723 (20 bp)
GGGTTTTACACTGGCAGGTACCTCA
LOC_Os02g46956
Os.37986.1.S1_at--418--7851Chr02:28666118..28666142 (25 bp)
GGTACCTCATGCAGCAGTCCATGAA
LOC_Os02g46956
Os.37986.1.S1_at--778--8531Chr02:28666181..28666205 (25 bp)
TGGAGTATCGCCAAAGATGTCCTTT
LOC_Os02g46956
Os.37986.1.S1_at--1034--6091Chr02:28666196..28666220 (25 bp)
GATGTCCTTTCCACTCCAGAAAAAT
LOC_Os02g46956
Os.37986.1.S1_at--176--3251Chr02:28666408..28666432 (25 bp)
CAAGCGATCCCTGTGTGATGGTTTT
LOC_Os02g46956
Os.37986.1.S1_at--177--8591Chr02:28666426..28666450 (25 bp)
TGGTTTTGCTATTTGCCGCCCAAAT
LOC_Os02g46956
Os.37986.1.S1_at--422--4511Chr02:28666440..28666464 (25 bp)
GCCGCCCAAATCTGCGTTGAAAATG
LOC_Os02g46956
Target Sequence 
GATGACTGCTGAAGGTGCCATGAATTTCATGAGAAGTACGATATCTGGAGACTTGGGCTCCTTTCCAAGAACAGACGCTG
CATCTGGAAAGGAGAGCATGCCTATGGGCATGAATCCAAATTTTGACACCATGGGAGCAGATAGTGATCTTGCTGTTGTC
TTAAATGCATGGTACGCAGCGGGGTTTTACACTGGCAGGTACCTCATGCAGCAGTCCATGAAAAATACCAGACAAGGCTG
ACTTCTATTAAAAAGCCATTTGGAGTATCGCCAAAGATGTCCTTTCCACTCCAGAAAAATCAAGAGATCTATTGACAACT
CGTGGAACTGAACATTCCATTAGCATATGTAATGCTATCAGTGCTTTTCTAGCAAGAGTTATGGTACAATTATACATGAA
TTTGCTGTAAGGCTCTGATTAGACATTAAGGAGAAACGATGGTACTGATCATTTTGCTATCCAAATCTATCAGATGATCT
GTAGAAACAAGCGATCCCTGTGTGATGGTTTTGCTATTTGCCGCCCAAATCTGCGTTGAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis