Browse Element(s) Details


Os.11656.1.S1_at

Description gb:AK066018.1
DB_XREF= gi:32976036
TID=Os.11656.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047D24, full insert sequence.
FL= gb:AK066018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4696211/11VHS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11656.1.S1_at--434--6031Chr02:28670406..28670430 (25 bp)
GAGATCCAAAAGGTGCTGTCCAAAT
LOC_Os02g46962
Os.11656.1.S1_at--133--10491Chr02:28670696..28670720 (25 bp)
TTAAATACCGTTCTGGCCAGTTCCT
LOC_Os02g46962
Os.11656.1.S1_at--47--2811Chr02:28670732..28670756 (25 bp)
AAGATGTTTGCTGTTTCATAGTGCC
LOC_Os02g46962
Os.11656.1.S1_at--829--9571Chr02:28670747..28670771 (25 bp)
TCATAGTGCCGAACGATATCTGTAT
LOC_Os02g46962
Os.11656.1.S1_at--21--6511Chr02:28670761..28670785 (25 bp)
GATATCTGTATTCATCCCCGTAGAA
LOC_Os02g46962
Os.11656.1.S1_at--177--5351Chr02:28670783..28670807 (25 bp)
GAAGATTTCACATTCGCCAGGATTT
LOC_Os02g46962
Os.11656.1.S1_at--77--4431Chr02:28670798..28670822 (25 bp)
GCCAGGATTTGGATCGCTTGTTTAT
LOC_Os02g46962
Os.11656.1.S1_at--146--6431Chr02:28670831..28670855 (25 bp)
GATCTATCATACTTGTCTGTCACAG
LOC_Os02g46962
Os.11656.1.S1_at--48--7191Chr02:28670845..28670869 (25 bp)
GTCTGTCACAGTTTGTTCGGTTGAT
LOC_Os02g46962
Os.11656.1.S1_at--110--191Chr02:28670868..28670892 (25 bp)
ATTTAAGTTGCTTCACCCTTCACAT
LOC_Os02g46962
Os.11656.1.S1_at--939--3311Chr02:28670888..28670912 (25 bp)
CACATCCTCTGGTTGCATGATTGCA
LOC_Os02g46962
Target Sequence 
GAGATCCAAAAGGTGCTGTCCAAATATGAACAGATGAAGAAACCCGCAGCGTCTGAGAACGCAGAACAACGGCCGGTAGT
CATACCAATTGCCACAGAACATGAAGATTCTGCTACGGTCGGCAATGAAGATGCCCTGGTCAGAAAACCAGCTGGTTCTC
GAGCAAGGTCAGGTGGAGATGATGATATCCTTGATGATCTCGATGAGATGATATTTGGCAAGAAGGGAGGAAGCAGTTCC
CAAGAAGGGCCCAAAAAGCAGGATCCGAAGAAAGATGACCTNATCAGCTTTTAAATACCGTTCTGGCCAGTTCCTCGTGG
AATCAGAAGATGTTTGCTGTTTCATAGTGCCGAACGATATCTGTATTCATCCCCGTAGAAGATTTCACATTCGCCAGGAT
TTGGATCGCTTGTTTATTTGCATACGATCTATCATACTTGTCTGTCACAGTTTGTTCGGTTGATTTAAGTTGCTTCACCC
TTCACATCCTCTGGTTGCATGATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis