Browse Element(s) Details


OsAffx.12531.1.S1_at

Description tigr:9630.m04565
TID=OsAffx.12531.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transcription factor KANADI3, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4694011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46920OsAffx.5514.1.S1_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920OsAffx.5514.1.S1_x_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920Os.54539.1.S1_at1/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009887biological_processorgan morphogenesis
GO:0009956biological_processradial pattern formation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010158biological_processabaxial cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12531.1.S1_at--395--7271Chr02:28647824..28647848 (25 bp)
GTCCATGCCGTCGAGCTTCTCGGAG
LOC_Os02g46940
OsAffx.12531.1.S1_at--352--8011Chr02:28647845..28648014 (25 bp)
GGAGGCCACGAGAGAGCTACACCCA
LOC_Os02g46940
OsAffx.12531.1.S1_at--740--5891Chr02:28648003..28648027 (25 bp)
GAGCTACACCCAAGTCAGTTCTTGA
LOC_Os02g46940
OsAffx.12531.1.S1_at--233--7351Chr02:28648038..28648062 (25 bp)
GTGAAGGACCTGACCTTAGCTCATG
LOC_Os02g46940
OsAffx.12531.1.S1_at--1022--711Chr02:28649317..28649341 (25 bp)
ATGTACCGGACCATCAAGACCACTG
LOC_Os02g46940
OsAffx.12531.1.S1_at--749--2751Chr02:28649332..28649356 (25 bp)
AAGACCACTGACCACAAACAACCTG
LOC_Os02g46940
OsAffx.12531.1.S1_at--470--2631Chr02:28649351..28649495 (25 bp)
AACCTGCTCCACCATATGGGCAAAC
LOC_Os02g46940
OsAffx.12531.1.S1_at--847--6031Chr02:28649509..28649533 (25 bp)
GAGATCCCAGACGACAATCTGTTTG
LOC_Os02g46940
OsAffx.12531.1.S1_at--841--2451Chr02:28649542..28649566 (25 bp)
AACACTAGTGGGTCAGAGTCTTCTG
LOC_Os02g46940
OsAffx.12531.1.S1_at--667--7111Chr02:28649553..28649577 (25 bp)
GTCAGAGTCTTCTGTTCAGCAACAA
LOC_Os02g46940
OsAffx.12531.1.S1_at--774--2451Chr02:28649573..28649597 (25 bp)
AACAATCCAATTTTGACGGCAATGA
LOC_Os02g46940
Target Sequence 
GTCCATGCCGTCGAGCTTCTCGGAGGCCACGAGAGAGCTACACCCAAGTCAGTTCTTGAGCTAATGGACGTGAAGGACCT
GACCTTAGCTCATGTCAAGTCTCACTTGCAGATGTACCGGACCATCAAGACCACTGACCACAAACAACCTGCTCCACCAT
ATGGGCAAACTAAGACTATCATAGAGATCCCAGACGACAATCTGTTTGACATCAACAACACTAGTGGGTCAGAGTCTTCT
GTTCAGCAACAATCCAATTTTGACGGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis