Browse Element(s) Details


OsAffx.2983.1.S1_x_at

Description tigr:9630.m04563
TID=OsAffx.2983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4693010/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46910Os.25564.1.S1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46910Os.22824.1.A1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46920OsAffx.5514.1.S1_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920OsAffx.5514.1.S1_x_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920Os.54539.1.S1_at1/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2983.1.S1_x_at--1141--3611Chr02:28638254..28638278 (25 bp)
CTTGTCTAGCTCTTGTCTCGAGAAT
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--685--10691Chr02:28638311..28638335 (25 bp)
TTGCCAGTTATCTACTCCTGATCAA
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--22--7191Chr02:28638340..28638364 (25 bp)
GTCTGTCTGACAAATTGGCTGCACA
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--1085--1451Chr02:28638405..28638429 (25 bp)
AGAAGATCTGGCCTAACTCCTGAGA
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--244--6771Chr02:28638846..28638870 (25 bp)
GTTACCTGAACTATCCTGTGGTGCA
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--521--8031Chr02:28638872..28638896 (25 bp)
GGAGTGAACCTGTCCATACTGATGA
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--607--3931Chr02:28638936..28638960 (25 bp)
CGACTTCATAGCTCCAACCAAATTG
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--532--7991Chr02:28638996..28639020 (25 bp)
GGATGAAGTTGCTTCCAGCCAGAAA
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--372--291Chr02:28639025..28639049 (25 bp)
ATAGTTGCAACTACCAATCTCCATC
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--1097--431Chr02:28639089..28639113 (25 bp)
ATCTTTTCCCAGCAGGATTTCTGAG
LOC_Os02g46930
OsAffx.2983.1.S1_x_at--978--8911NONE
TGAGCTGGAGGAAATCACTAGCACT
NONE
Target Sequence 
CTTGTCTAGCTCTTGTCTCGAGAATACAATTACCCCTGAAAATGCAATTAGTAATGCTTGCCAGTTATCTACTCCTGATC
AAACATGTCTGTCTGACAAATTGGCTGCACATGATACTGATGATTCTGACTGTGAGATATTTAGAGTAAAGAGAAGATCT
GGCCTAACTCCTGAGAAAAGACACATGGAAGATGGAACAACAAATTTCACTGGGAATCAGGTATTGAAACGGCTGAAGAA
AATTAATGCACATGACAGACAAGAACATAAGTTACCTGAACTATCCTGTGGTGCAAGGAGTGAACCTGTCCATACTGATG
ATTGTATACATTGTGTTGACTTCATTTCTGAAAATGGAGACGACTTCATAGCTCCAACCAAATTGAAGATGATACATCAA
CTAGATGCAAATATTGTTGAGGATGAAGTTGCTTCCAGCCAGAAATATAATAGTTGCAACTACCAATCTCCATCTATAGA
GCTTGGGCCAAAACGCTTGAAAATTCGTGGCCCATCTTTTCCCAGCAGGATTTCTGAGCTGGAGGAAATCACTAGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2983.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis