Browse Element(s) Details


Os.25564.1.S1_at

Description gb:AK101915.1
DB_XREF= gi:32987124
TID=Os.25564.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071H14, full insert sequence.
FL= gb:AK105864.1 gb:AK101915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4691011/11xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46880OsAffx.22848.3.S1_x_at3/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_x_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46890NANA2+28599792..28602017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46900NANA2+28603749..28606697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46910Os.25564.1.S1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46910Os.22824.1.A1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46920OsAffx.5514.1.S1_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920OsAffx.5514.1.S1_x_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920Os.54539.1.S1_at1/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25564.1.S1_at--22--8251Chr02:28618354..28618378 (25 bp)
GGCACATGACCTACACCGTGTGCTA
LOC_Os02g46910
Os.25564.1.S1_at--275--7171Chr02:28618422..28618446 (25 bp)
GTCTCTGACGTGGAGAAGGAGTCCT
LOC_Os02g46910
Os.25564.1.S1_at--921--8371Chr02:28618458..28618482 (25 bp)
GGCGAGTCCAAGAACGTCGTCATGA
LOC_Os02g46910
Os.25564.1.S1_at--74--4471Chr02:28618540..28618564 (25 bp)
GCCTCGACGTGTCCAGCAGCTGAAG
LOC_Os02g46910
Os.25564.1.S1_at--162--7091Chr02:28618566..28618590 (25 bp)
GTCAACTTGGGAAGCTAATGGCATA
LOC_Os02g46910
Os.25564.1.S1_at--269--6251Chr02:28618592..28618616 (25 bp)
GATGGTTACTATTACACTACTAGAT
LOC_Os02g46910
Os.25564.1.S1_at--521--2031Chr02:28618610..28618634 (25 bp)
ACTAGATTCTATTAATTTTGCGGTA
LOC_Os02g46910
Os.25564.1.S1_at--1087--6531Chr02:28618641..28618665 (25 bp)
GATTAATTGTAGTATGGTTTTCCAT
LOC_Os02g46910
Os.25564.1.S1_at--58--8751Chr02:28618693..28618717 (25 bp)
TGCTAGGGATTAAGTTCGGTACCAA
LOC_Os02g46910
Os.25564.1.S1_at--189--7851Chr02:28618710..28618734 (25 bp)
GGTACCAATTTCGACTATTATTCTT
LOC_Os02g46910
Os.25564.1.S1_at--959--151Chr02:28618726..28618750 (25 bp)
ATTATTCTTTGATTCGTTGGATGGC
LOC_Os02g46910
Target Sequence 
GGCACATGACCTACACCGTGTGCTACGACGCGGTGCGGTACGCGGCCGGGCCGTTCCCGGAGTGCGACGTCTCTGACGTG
GAGAAGGAGTCCTTCTCGGCGTGGGGCGAGTCCAAGAACGTCGTCATGAAGGCNCGTGGCCGCGGGCGCCGCCGAGGACG
CAAGGCCGGCGCCGGAGCCATGTCGCGCCTCGACGTGTCCAGCAGCTGAAGTGTCAACTTGGGAAGCTAATGGCATATGA
TGGTTACTATTACACTACTAGATTCTATTAATTTTGCGGTATTGATTGATTAATTGTAGTATGGTTTTCCATGTATGTAT
AGTTTGTAAAGGTAGTAGGTGCTAGGGATTAAGTTCGGTACCAATTTCGACTATTATTCTTTGATTCGTTGGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis