Browse Element(s) Details


Os.5373.1.S1_at

Description gb:AK060255.1
DB_XREF= gi:32970273
TID=Os.5373.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-E05, full insert sequence.
FL= gb:AK060255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4693011/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46910Os.25564.1.S1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46910Os.22824.1.A1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46920OsAffx.5514.1.S1_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920OsAffx.5514.1.S1_x_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920Os.54539.1.S1_at1/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5373.1.S1_at--1039--10831Chr02:28639147..28639171 (25 bp)
TTGGGCAGCCAGCATGCTCGATGAC
LOC_Os02g46930
Os.5373.1.S1_at--962--4051Chr02:28639165..28639189 (25 bp)
CGATGACGACTGCTAGGCCATTGGT
LOC_Os02g46930
Os.5373.1.S1_at--561--8431Chr02:28639180..28639204 (25 bp)
GGCCATTGGTTCTAACACTACGTAA
LOC_Os02g46930
Os.5373.1.S1_at--876--8951Chr02:28639237..28639261 (25 bp)
TGAAAGCTCCTACCAGCCAAGGTTT
LOC_Os02g46930
Os.5373.1.S1_at--977--10551Chr02:28639356..28639380 (25 bp)
TTCTTGATTTTATTGCTGGGCCACA
LOC_Os02g46930
Os.5373.1.S1_at--581--10391Chr02:28639425..28639449 (25 bp)
TTTTCCACTGTACATCTTCACATAC
LOC_Os02g46930
Os.5373.1.S1_at--852--3671Chr02:28639462..28639486 (25 bp)
CTTTCTCGTAGGTTTTTCACTGTGA
LOC_Os02g46930
Os.5373.1.S1_at--3--3731Chr02:28639497..28639521 (25 bp)
CTACTACCTTACCAATTTCTTTCAT
LOC_Os02g46930
Os.5373.1.S1_at--811--6791Chr02:28639606..28639630 (25 bp)
GTTATTCAACTTTCTACTGGTCTTT
LOC_Os02g46930
Os.5373.1.S1_at--846--1951Chr02:28639621..28639645 (25 bp)
ACTGGTCTTTGATCTCTTCATGTAA
LOC_Os02g46930
Os.5373.1.S1_at--187--6991Chr02:28639680..28639704 (25 bp)
GTACCGGTACATTTGTCTCCAGATG
LOC_Os02g46930
Target Sequence 
TTGGGCAGCCAGCATGCTCGATGACGACTGCTAGGCCATTGGTTCTAACACTACGTAAGTTAACAAACAGCATCCCTAAC
TTNTGGAAGCTGAAAGCTCCTACCAGCCAAGGTTTCCAAATTGTTGGTTGGTCAGCTGGTAACAGATGGCTCAGATTTAA
TTNTTNTGCGGGCCTCCAATAGAGGCATTGACATGGGTTCATGGCTGGATTCTTGATTTTATTGCTGGGCCACATTTGTG
GTAGGGGGCTGAAAGCAGTAGGCAGACAATTNTGATGTTTTTCCACTGTACATCTTCACATACATCTCCTTTCACCTTTC
TCGTAGGTTTTTCACTGTGAAGAGGTTAGTCTACTACCTTACCAATTTCTTTCATTCTTTTTGCACACATACACATGTAC
CTAGAATGCTTAATCAGATGCAAATATGNAATTGATACTGTAGATCCCATATTGAGTCAGTTATTCAACTTTCTACTGGT
CTTTGATCTCTTCATGTAATCTCAAATGATCAAATTTCTTTTGTCATTATTGGTACCGGTACATTTGTCTCCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis