Browse Element(s) Details


OsAffx.24758.1.S1_at

Description tigr:9630.m04566
TID=OsAffx.24758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4695011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46950OsAffx.24758.1.S1_at11/112+28659035..28659376hypothetical protein
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24758.1.S1_at--237--1291Chr02:28659081..28659105 (25 bp)
AGATCCACTCTCCAGGCAGTCGAGG
LOC_Os02g46950
OsAffx.24758.1.S1_at--422--9231Chr02:28659091..28659115 (25 bp)
TCCAGGCAGTCGAGGGCATTCAGAT
LOC_Os02g46950
OsAffx.24758.1.S1_at--758--111Chr02:28659108..28659132 (25 bp)
ATTCAGATCTGGAGGCCGACGCCCG
LOC_Os02g46950
OsAffx.24758.1.S1_at--894--3411Chr02:28659140..28659164 (25 bp)
CAGAATGGCTCGACCCGACAAAGGT
LOC_Os02g46950
OsAffx.24758.1.S1_at--740--1791Chr02:28659152..28659176 (25 bp)
ACCCGACAAAGGTCAGCCCTCGTGG
LOC_Os02g46950
OsAffx.24758.1.S1_at--205--3791Chr02:28659170..28659194 (25 bp)
CTCGTGGTGGAGAAGCCAACCTCCG
LOC_Os02g46950
OsAffx.24758.1.S1_at--108--1451Chr02:28659180..28659204 (25 bp)
AGAAGCCAACCTCCGGCTTGCTTGG
LOC_Os02g46950
OsAffx.24758.1.S1_at--423--911Chr02:28659231..28659255 (25 bp)
AGGCGGCAGACAGCCCACGGGCAAA
LOC_Os02g46950
OsAffx.24758.1.S1_at--1040--1031Chr02:28659267..28659291 (25 bp)
AGGTGGCGACTAGACCATGGGCGGA
LOC_Os02g46950
OsAffx.24758.1.S1_at--852--10651Chr02:28659297..28659321 (25 bp)
TTCCCGACGCGCTAGAGCCAATAGA
LOC_Os02g46950
OsAffx.24758.1.S1_at--558--7731Chr02:28659322..28659346 (25 bp)
GGTGGAGGCGATCAGATCCAACCGC
LOC_Os02g46950
Target Sequence 
AGATCCACTCTCCAGGCAGTCGAGGGCATTCAGATCTGGAGGCCGACGCCCGCGAGCTCCAGAATGGCTCGACCCGACAA
AGGTCAGCCCTCGTGGTGGAGAAGCCAACCTCCGGCTTGCTTGGGCCGACGGAGGTGGAGGCGGTGGCAGAGGCGGCAGA
CAGCCCACGGGCAAAGGCGGAGGCGGAGGTGGCGACTAGACCATGGGCGGAGGCGGTTCCCGACGCGCTAGAGCCAATAG
AGGTGGAGGCGATCAGATCCAACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis