Browse Element(s) Details


Os.5391.1.S1_at

Description gb:AK099695.1
DB_XREF= gi:32984904
TID=Os.5391.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074G15, full insert sequence.
FL= gb:AK099695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4144011/11Cytochrome P450 98A1, putative, expressed
LOC_Os02g469801/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein
LOC_Os05g41440Os.5391.1.S1_at11/115+24187878..24191966Cytochrome P450 98A1, putative, expressed
LOC_Os05g41450Os.51018.1.S1_at11/115+24192758..24197089Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g41460Os.7892.1.S1_a_at10/115+24197246..24198517Cysteine proteinase inhibitor-II, putative, expressed
LOC_Os05g41470OsAffx.15059.1.S1_at11/115+24199172..24199603hypothetical protein
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0005792cellular_componentmicrosome
GO:0009507cellular_componentchloroplast
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5391.1.S1_at--39--2891Chr05:24191374..24191398 (25 bp)
AAGGGCAGCGACTTCAGGGTGCTCC
LOC_Os05g41440
Os.5391.1.S1_at--1002--3431Chr05:24191482..24191506 (25 bp)
CAGTTCGAGTGGTCTCTCCCCGAGG
LOC_Os05g41440
Os.5391.1.S1_at--398--711Chr05:24191530..24191554 (25 bp)
ATGATGGAGTCCAACGGCGTCGTCA
LOC_Os05g41440
Os.5391.1.S1_at--574--2571Chr05:24191542..24191566 (25 bp)
AACGGCGTCGTCACGTTCATGAGCA
LOC_Os05g41440
Os.5391.1.S1_at--573--1892Chr05:24191554..24191578 (25 bp)
ACGTTCATGAGCACGTCGCTGCAGG
LOC_Os05g41440
Os.5391.1.S1_at--580--5611Chr05:24191599..24191623 (25 bp)
GACAACCCGGACCTGTACAAGAGGT
LOC_Os05g41440
Os.5391.1.S1_at--484--1331Chr05:24191618..24191642 (25 bp)
AGAGGTTCCCTGTCGAGATGTGATC
LOC_Os05g41440
Os.5391.1.S1_at--407--6391Chr05:24191639..24191663 (25 bp)
GATCGAACAGTTTGCTTTGCTGCCT
LOC_Os05g41440
Os.5391.1.S1_at--626--4771Chr05:24191664..24191688 (25 bp)
GCTGCTGCTGGTTATACAGACAGAC
LOC_Os05g41440
Os.5391.1.S1_at--939--5731Chr05:24191686..24191710 (25 bp)
GACTGGAGTTCTGCTTTCAAAGTTT
LOC_Os05g41440
Os.5391.1.S1_at--293--6011Chr05:24191799..24191823 (25 bp)
GAGAGCAGATCGACTTTTGTAATTT
LOC_Os05g41440
Target Sequence 
AAGGGCAGCGACTTCAGGGTGCTCCCCTTCGGCGCCGGCCGCCGCGTGTGCCCCGGCGCCCAGCTCGGCATCAACCTCGT
CGCCTCCATGATCGGGCACCTCCTCCACCAGTTCGAGTGGTCTCTCCCCGAGGGCACCAGGCCGGAGGACGTCAACATGA
TGGAGTCCAACGGCGTCGTCACGTTCATGAGCACGTCGCTGCAGGTCATCGCCAAGCCCAGGCTCGACAACCCGGACCTG
TACAAGAGGTTCCCTGTCGAGATGTGATCGAACAGTTTGCTTTGCTGCCTGCTGCTGCTGGTTATACAGACAGACTGGAG
TTCTGCTTTCAAAGTTTCAGCTATTGCTCATGATGTTGTTGTTGTAAAATTTGAGGTGTTAATTGCCTTGTGAATGAACG
AATCAATCAATCTCGTAAAGTTATCGAGAGCAGATCGACTTTTGTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis