Browse Element(s) Details


Os.11883.2.S1_at

Description gb:AK071846.1
DB_XREF= gi:32981869
TID=Os.11883.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120O09, full insert sequence.
FL= gb:AK071846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4148011/11phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41440Os.5391.1.S1_at11/115+24187878..24191966Cytochrome P450 98A1, putative, expressed
LOC_Os05g41450Os.51018.1.S1_at11/115+24192758..24197089Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g41460Os.7892.1.S1_a_at10/115+24197246..24198517Cysteine proteinase inhibitor-II, putative, expressed
LOC_Os05g41470OsAffx.15059.1.S1_at11/115+24199172..24199603hypothetical protein
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41520OsAffx.27276.1.S1_at11/115+24226697..24227557Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g41530Os.26545.1.A1_at11/115+24229645..24233859expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11883.2.S1_at--857--11Chr05:24205982..24206003 (22 bp)
ATTGGGTATCTGGTGCAAAGTGCAA
LOC_Os05g41480
Os.11883.2.S1_at--1155--2751Chr05:24206004..24206028 (25 bp)
AAGACTGTAGTTTGGTTGGTCTACG
LOC_Os05g41480
Os.11883.2.S1_at--234--6631Chr05:24206018..24206042 (25 bp)
GTTGGTCTACGGTTGCTTTCAAGGA
LOC_Os05g41480
Os.11883.2.S1_at--898--10551Chr05:24206030..24206054 (25 bp)
TTGCTTTCAAGGAGGTGGACACCAG
LOC_Os05g41480
Os.11883.2.S1_at--575--8131Chr05:24206046..24206070 (25 bp)
GGACACCAGTTTGTTCTTTCACTTA
LOC_Os05g41480
Os.11883.2.S1_at--1019--10471Chr05:24206072..24206096 (25 bp)
TTAACTTTAGTTGGATCTGGAGGGC
LOC_Os05g41480
Os.11883.2.S1_at--874--10431Chr05:24206118..24206142 (25 bp)
TTAGGAAAATACTTGCACTTGCACC
LOC_Os05g41480
Os.11883.2.S1_at--22--3891Chr05:24206149..24206173 (25 bp)
CTGGAGGACTAGAGTAAACTTTCAT
LOC_Os05g41480
Os.11883.2.S1_at--441--10471Chr05:24206175..24206199 (25 bp)
TTACCCTGTTATTTATTCAGCTATT
LOC_Os05g41480
Os.11883.2.S1_at--55--5831Chr05:24206258..24206282 (25 bp)
GTTCTACTAGTAGCCTAGGTACTAA
LOC_Os05g41480
Os.11883.2.S1_at--286--1991Chr05:24206357..24206381 (25 bp)
ACTGCTGTGTATTTCTACCTTTTCA
LOC_Os05g41480
Target Sequence 
ATTGGGTATCTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTG
TTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTG
CACCTACTTTCTGGAGGACTAGAGTAAACTTTCATGNTTACCCTGTTATTTATTCAGCTATTTNTTGTTCCNAGAGAAAG
ACAGCCTNCGTTGCCTCTCTCGCTCATNGCCTAAAATTTATTTGTTCTACTAGTAGCCTAGGTACTAAAAATGNTNACTT
NCTNACATATTGGTATTTTGGTGGTTATCTTCTATATATAATGAGCTTACTGTAATATTATAATCNACTGCTGTGTATTT
CTACCTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11883.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis