Browse Element(s) Details


OsAffx.27276.1.S1_at

Description tigr:9633.m03891
TID=OsAffx.27276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4152011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41520OsAffx.27276.1.S1_at11/115+24226697..24227557Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g41530Os.26545.1.A1_at11/115+24229645..24233859expressed protein
LOC_Os05g41540Os.26821.1.S1_at11/115+24237832..24239520bZIP transcription factor family protein, putative, expressed
LOC_Os05g41550Os.38283.1.S2_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S1_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S3_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S4_at3/115+24241592..24246732expressed protein
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27276.1.S1_at--991--4671Chr05:24227166..24227190 (25 bp)
GCGGATACTACCGTGCCGGTCTGGA
LOC_Os05g41520
OsAffx.27276.1.S1_at--323--4251Chr05:24227055..24227079 (25 bp)
CCGTGGTGACGATCAGCCGCCGGCA
LOC_Os05g41520
OsAffx.27276.1.S1_at--724--9131Chr05:24227011..24227035 (25 bp)
TGCCCGGTTTGCCAGGACGAGTTCC
LOC_Os05g41520
OsAffx.27276.1.S1_at--89--971Chr05:24226998..24227022 (25 bp)
AGGACGAGTTCCAGCTCGGCGCCGA
LOC_Os05g41520
OsAffx.27276.1.S1_at--268--7651Chr05:24226968..24226992 (25 bp)
GGGAGATGCCGTGCGCCCACCTGTA
LOC_Os05g41520
OsAffx.27276.1.S1_at--1160--491Chr05:24226930..24226954 (25 bp)
ATCGTGCCGTGGCTGGTCCATCACA
LOC_Os05g41520
OsAffx.27276.1.S1_at--696--7531Chr05:24226922..24226946 (25 bp)
GTGGCTGGTCCATCACAACTCCTGT
LOC_Os05g41520
OsAffx.27276.1.S1_at--396--6851Chr05:24226790..24226814 (25 bp)
GTTTGGGCCGACTAGCTCCACATCT
LOC_Os05g41520
OsAffx.27276.1.S1_at--297--2091Chr05:24226771..24226795 (25 bp)
ACATCTCACTCTCACGAGTGTGAGG
LOC_Os05g41520
OsAffx.27276.1.S1_at--154--871Chr05:24226746..24226770 (25 bp)
ATGGCTCGAGCGACACGACGGTTTA
LOC_Os05g41520
OsAffx.27276.1.S1_at--1076--1831Chr05:24226733..24226757 (25 bp)
CACGACGGTTTACGAAGATCCTGGT
LOC_Os05g41520
Target Sequence 
GCGGATACTACCGTGCCGGTCTGGAGGCGCTCTTCGAGCAGCTGCAGAACCAGCTGGGGAGCAGCAGGCAGGGCCCTCCA
CCGGCGCCGCCGTCGGCGATCGACGCGATGCCCGTGGTGACGATCAGCCGCCGGCACCTCCGCGCCGAGCCGCGGTGCCC
GGTTTGCCAGGACGAGTTCCAGCTCGGCGCCGAGGCGCGGGAGATGCCGTGCGCCCACCTGTACCACGCCGACTGCATCG
TGCCGTGGCTGGTCCATCACAACTCCTGTCCCGTCTGCCGCCACTCGCTGCCGCCGCCGGCGACCACCGCTTCCGGTGGA
GGAGCTAGCGGCGGCGAGAGGCAAGTCAGGCGAGGCTCGCGCTCGTTCCTCTGGCCGTTTGGGCCGACTAGCTCCACATC
TCACTCTCACGAGTGTGAGGATGGCTCGAGCGACACGACGGTTTACGAAGATCCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis