Browse Element(s) Details


Os.38283.1.S3_a_at

Description gb:AK061674.1
DB_XREF= gi:32971692
TID=Os.38283.1
CNT=159
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.38283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H02, full insert sequence.
FL= gb:AK120489.1 gb:AK061674.1 gb:AK072449.1 gb:AK069722.1 gb:AK120354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41520OsAffx.27276.1.S1_at11/115+24226697..24227557Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g41530Os.26545.1.A1_at11/115+24229645..24233859expressed protein
LOC_Os05g41540Os.26821.1.S1_at11/115+24237832..24239520bZIP transcription factor family protein, putative, expressed
LOC_Os05g41550Os.38283.1.S2_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S1_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S3_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S4_at3/115+24241592..24246732expressed protein
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41570NANA5+24259340..24259720hypothetical protein
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38283.1.S3_a_at--116--7191Chr05:24243060..24243084 (25 bp)
GTCTGTCTCTATGCTGTTCTTTGTC
LOC_Os05g41550
Os.38283.1.S3_a_at--686--9551Chr05:24243043..24243067 (25 bp)
TCTTTGTCTCGGCACTTTGAGGAAT
LOC_Os05g41550
Os.38283.1.S3_a_at--874--8211Chr05:24243023..24243047 (25 bp)
GGAATTTTACCTAATGGCCAGCTAT
LOC_Os05g41550
Os.38283.1.S3_a_at--1124--8431Chr05:24243008..24243032 (25 bp)
GGCCAGCTATCAGACATTATCCTTT
LOC_Os05g41550
Os.38283.1.S3_a_at--573--7611Chr05:24242843..24242867 (25 bp)
GGGAAGTCCGTGTTATTTATCAATA
LOC_Os05g41550
Os.38283.1.S3_a_at--914--7931Chr05:24242804..24242828 (25 bp)
GGATTTGCTGTCATTCAATATCTAC
LOC_Os05g41550
Os.38283.1.S3_a_at--1069--6051Chr05:24242766..24242790 (25 bp)
GAGTTGAAGCTCGACTGGACCAAAG
LOC_Os05g41550
Os.38283.1.S3_a_at--423--10871Chr05:24242711..24242735 (25 bp)
TTGGATTTCTTCATGTGCACACTTC
LOC_Os05g41550
Os.38283.1.S3_a_at--1011--9011Chr05:24242696..24242720 (25 bp)
TGCACACTTCATCTGTCCAACAATA
LOC_Os05g41550
Os.38283.1.S3_a_at--727--3111Chr05:24242616..24242640 (25 bp)
AATTTCGGAACCATGCTTGGAGTTC
LOC_Os05g41550
Os.38283.1.S3_a_at--979--7871Chr05:24242540..24242564 (25 bp)
GGTTTTATATATGTCCCTTGTTGAT
LOC_Os05g41550
Target Sequence 
GTCTGTCTCTATGCTGTTCTTTGTCTCGGCACTTTGAGGAATTTTACCTAATGGCCAGCTATCAGACATTATCCTTTTAT
ATAAGGTGTGTTCCGTACCCTTGGTATAAATTATTTTAAAAGCTAATCTTGTTTAGCGTATGTGTTTCTGTGCTTTAGAT
GACACGCCAAAGGGTGGATGTTGGAGTTGAAAAGGGATCNATGTTTGGTTAGTTCATGGGAAGTCCGTGTTATTTATCAA
TAGTGGTTCCCTCATTGGATTTGCTGTCATTCAATATCTACAAGTTAAGGTTTGGAGTTGAAGCTCGACTGGACCAAAGA
TCATGCATTGGAAAAAATTAACCTTTTGTTTGGATTTCTTCATGTGCACACTTCATCTGTCCAACAATACTTATCTGCTT
CTTCTCCAACAATTAGAAGTATATATATGGCTTGTGGAGTAGCTAATTTCGGAACCATGCTTGGAGTTCCTTCCCTGACT
TCTTTTNTTAGTCTTTGTTAGTTAATGCTTTTCAGACATTGGTTTTATATATGTCCCTTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38283.1.S3_a_at     

Putative homologies in rice

Putative homologies in arabidopsis