Browse Element(s) Details


Os.52922.1.S1_at

Description gb:AK069939.1
DB_XREF= gi:32979963
TID=Os.52922.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039K23, full insert sequence.
FL= gb:AK069939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4151011/11glycine-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41450Os.51018.1.S1_at11/115+24192758..24197089Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g41460Os.7892.1.S1_a_at10/115+24197246..24198517Cysteine proteinase inhibitor-II, putative, expressed
LOC_Os05g41470OsAffx.15059.1.S1_at11/115+24199172..24199603hypothetical protein
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41520OsAffx.27276.1.S1_at11/115+24226697..24227557Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g41530Os.26545.1.A1_at11/115+24229645..24233859expressed protein
LOC_Os05g41540Os.26821.1.S1_at11/115+24237832..24239520bZIP transcription factor family protein, putative, expressed
LOC_Os05g41550Os.38283.1.S2_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S1_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S3_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S4_at3/115+24241592..24246732expressed protein
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0006352biological_processtranscription initiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52922.1.S1_at--235--10691Chr05:24218197..24218221 (25 bp)
TTCCAGCCTAGGGTTCGCGGGCTCT
LOC_Os05g41510
Os.52922.1.S1_at--55--9991Chr05:24218348..24218372 (25 bp)
TATCGTCCCGCGGAAACCCTAGATT
LOC_Os05g41510
Os.52922.1.S1_at--264--10311Chr05:24218371..24218395 (25 bp)
TTTCGCCGCCGCACGCGTGGAGCAA
LOC_Os05g41510
Os.52922.1.S1_at--800--3351Chr05:24218382..24218406 (25 bp)
CACGCGTGGAGCAATCGTGCGGCTC
LOC_Os05g41510
Os.52922.1.S1_at--33--8631Chr05:24218408..24218432 (25 bp)
TGGTGTCCCTCTATGGCTATGTAAG
LOC_Os05g41510
Os.52922.1.S1_at--949--10811Chr05:24218454..24218478 (25 bp)
TTGTGAGGCTCTCTCGGCATAACCG
LOC_Os05g41510
Os.52922.1.S1_at--1144--3551Chr05:24218471..24218495 (25 bp)
CATAACCGCTCTCGCGTTCTAGGGT
LOC_Os05g41510
Os.52922.1.S1_at--1111--6711Chr05:24218486..24218510 (25 bp)
GTTCTAGGGTTTGCGCCGCCTCGAC
LOC_Os05g41510
Os.52922.1.S1_at--423--4471Chr05:24218503..24218527 (25 bp)
GCCTCGACTGCAATGGGTGGTCGCA
LOC_Os05g41510
Os.52922.1.S1_at--77--2891Chr05:24218716..24218740 (25 bp)
AAGGGACAATATGGATCGGGACGAT
LOC_Os05g41510
Os.52922.1.S1_at--623--7991Chr05:24219153..24219177 (25 bp)
GGATGGCTTCATAGTAGATGATGCA
LOC_Os05g41510
Target Sequence 
TTCCAGCCTAGGGTTCGCGGGCTCTCCGGCTGCCGGATTCGCCTCCTCGCCGGCGGGTAGAGGCGGCTGAGGGGGAGTGC
CGGGGCGCTCCGCATCGCTCCCTCCCTCCCTCCCGTCGTCGTCGCCGGCGGCGTCGGGTCGGGCCCGGCGGTATCGTCCC
GCGGAAACCCTAGATTTCGCCGCCGCACGCGTGGAGCAATCGTGCGGCTCCTGGTGTCCCTCTATGGCTATGTAAGGAGG
GGATTCCACCTCCCCGCTTGTGAGGCTCTCTCGGCATAACCGCTCTCGCGTTCTAGGGTTTGCGCCGCCTCGACTGCAAT
GGGTGGTCGCACGGTGCTCTCCGACGAGGAAGATGAAATCGAGGAGGAAGAGGAGGAGGAGAATCCGCGGCCTTCGCGGA
GAGGAAGGGACAATATGGATCGGGACGATGATGATGACGAGGAGGACGAAGAAGACGAGGGTCAGGACGAATATGAGAAG
GATGGCTTCATAGTAGATGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis