Browse Element(s) Details


Os.26821.1.S1_at

Description gb:AK072281.1
DB_XREF= gi:32982304
TID=Os.26821.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018E07, full insert sequence.
FL= gb:AK104986.1 gb:AK072281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4154011/11bZIP transcription factor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41520OsAffx.27276.1.S1_at11/115+24226697..24227557Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g41530Os.26545.1.A1_at11/115+24229645..24233859expressed protein
LOC_Os05g41540Os.26821.1.S1_at11/115+24237832..24239520bZIP transcription factor family protein, putative, expressed
LOC_Os05g41550Os.38283.1.S2_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S1_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S3_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S4_at3/115+24241592..24246732expressed protein
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41570NANA5+24259340..24259720hypothetical protein
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26821.1.S1_at--562--91Chr05:24238383..24238407 (25 bp)
ATTCCCTTACCAGAAGCCGTGCAGT
LOC_Os05g41540
Os.26821.1.S1_at--223--9471Chr05:24238352..24238376 (25 bp)
TCTGTGGCATGCACTGATCCAGGTA
LOC_Os05g41540
Os.26821.1.S1_at--57--6371Chr05:24238337..24238361 (25 bp)
GATCCAGGTATGTGCTTCAATGGCA
LOC_Os05g41540
Os.26821.1.S1_at--140--3711Chr05:24238279..24238303 (25 bp)
CTAGACCAGTGGGTGCAGATCGCAT
LOC_Os05g41540
Os.26821.1.S1_at--477--3171Chr05:24238224..24238248 (25 bp)
AATTGATATCCCAGGACCGGTGCAT
LOC_Os05g41540
Os.26821.1.S1_at--678--7191Chr05:24238181..24238205 (25 bp)
GTCGGAAGCTTGGTGACTTCTGCTT
LOC_Os05g41540
Os.26821.1.S1_at--651--5691Chr05:24238167..24238191 (25 bp)
GACTTCTGCTTCTCTATCTGAGTGA
LOC_Os05g41540
Os.26821.1.S1_at--555--1251Chr05:24238111..24238135 (25 bp)
AGATTTTCAATCCATGCCATGCCAG
LOC_Os05g41540
Os.26821.1.S1_at--207--591Chr05:24238093..24238117 (25 bp)
ATGCCAGGTTCTTCTTACTTGAGGG
LOC_Os05g41540
Os.26821.1.S1_at--201--6411Chr05:24238008..24238032 (25 bp)
GATCTGGTGCCTTTTATGTTCTAAT
LOC_Os05g41540
Os.26821.1.S1_at--579--5711Chr05:24237947..24237971 (25 bp)
GACTCCTCGTGTAAGTGTTCACTGT
LOC_Os05g41540
Target Sequence 
ATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGA
TTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAA
ATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTGAGTG
AATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAA
CAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAAT
GATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis