Browse Element(s) Details


OsAffx.19695.1.S1_at

Description tigr:9633.m03879
TID=OsAffx.19695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4141010/11hypothetical protein
LOC_Os03g307301/11retrotransposon protein, putative, unclassified
LOC_Os04g282201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific
LOC_Os05g41360OsAffx.4587.1.S1_at11/115+24143999..24145518expressed protein
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein
LOC_Os05g41440Os.5391.1.S1_at11/115+24187878..24191966Cytochrome P450 98A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19695.1.S1_at--816--6951Chr05:24163757..24164013 (25 bp)
GTAGCGCCATACGAACAGGAAGCCA
LOC_Os05g41410
OsAffx.19695.1.S1_at--1025--2651Chr05:24164008..24164032 (25 bp)
AAGCCATGGGCTTAATGATGCAGAC
LOC_Os05g41410
OsAffx.19695.1.S1_at--271--6331Chr05:24164024..24164048 (25 bp)
GATGCAGACGATGACGCAGCAAGGA
LOC_Os05g41410
OsAffx.19695.1.S1_at--801--5791Chr05:24164080..24164104 (25 bp)
GACGCAGATCAAACTTGACTCGGAG
LOC_Os05g41410
OsAffx.19695.1.S1_at--555--792Chr12:18571454..18571477 (24 bp)
ATGTGGATTCGGAGTCGACATCGTA
NONE
OsAffx.19695.1.S1_at--872--7212Chr12:18571466..18571490 (25 bp)
GTCGACATCGTAAAGGACTCTGTTT
NONE
OsAffx.19695.1.S1_at--955--5711NONE
GACTCTGTTTGGAATTCAGTCTACG
NONE
OsAffx.19695.1.S1_at--169--1231Chr05:24165284..24165429 (25 bp)
AGTTCTTCATGTCTGACGACTGAGA
LOC_Os05g41410
OsAffx.19695.1.S1_at--108--10491Chr05:24165481..24165505 (25 bp)
TTACAGGGATATCGGAGTCTCTTGA
LOC_Os05g41410
OsAffx.19695.1.S1_at--680--79714Chr09:15096881..15096905 (25 bp)
GGATCGGCATGGTGATTCTACTACT
NONE
OsAffx.19695.1.S1_at--631--10578Chr09:15096896..15096920 (25 bp)
TTCTACTACTTCTAGGTGGCGTATA
NONE
Target Sequence 
GTAGCGCCATACGAACAGGAAGCCATGGGCTTAATGATGCAGACGATGACGCAGCAAGGAAGACGATAAAATTGAGTTCA
ATGCAGAAGAAGACGCAGATCAAACTTGACTCGGAGAAGATGTGGATTCGGAGTCGACATCGTAAAGGACTCTGTTTGGA
ATTCAGTCTACGGATGCGGGAAAGCGTGAATGATGGATTTATTAGTTCAGTTCATAAGACGACAAGGAAGAAAGGGTTCA
GTTCTTCATGTCTGACGACTGAGATGATAGGTGAGAAGGTGGAGCACTGTTGCAGGTGGATTCAAGAGGAAGAAATTACA
GGGATATCGGAGTCTCTTGAAGACGGTGGGTCTGGCGTAGACTCGTCGGGCGGCTTTGCGGTGAAGCTGCAAAGAAGACA
ACCCAAGTCTGGAGGACAGGTGGATCGGCATGGTGATTCTACTACTTCTAGGTGGCGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis