Browse Element(s) Details


OsAffx.27274.1.S1_at

Description tigr:9633.m03876
TID=OsAffx.27274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g413808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific
LOC_Os05g41360OsAffx.4587.1.S1_at11/115+24143999..24145518expressed protein
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27274.1.S1_at--54--6071Chr05:24154092..24154116 (25 bp)
GAGTTCGGCCGCGAGCTGTCGTTCA
LOC_Os05g41380
OsAffx.27274.1.S1_at--398--5891Chr05:24154104..24154128 (25 bp)
GAGCTGTCGTTCAGTGACCTCGTCG
LOC_Os05g41380
OsAffx.27274.1.S1_at--1037--3991Chr05:24154111..24154135 (25 bp)
CGTTCAGTGACCTCGTCGTAGTCGA
LOC_Os05g41380
OsAffx.27274.1.S1_at--870--9391Chr05:24154123..24154147 (25 bp)
TCGTCGTAGTCGAGGACACGGCGAA
LOC_Os05g41380
OsAffx.27274.1.S1_at--566--10011Chr05:24154129..24154153 (25 bp)
TAGTCGAGGACACGGCGAACAACCC
LOC_Os05g41380
OsAffx.27274.1.S1_at--426--4111Chr05:24154144..24154168 (25 bp)
CGAACAACCCCAGCCCGAGAGGAGG
LOC_Os05g41380
OsAffx.27274.1.S1_at--806--7491Chr05:24154174..24154198 (25 bp)
GTGGTGGTGACAGGGCAGCTCCGAC
LOC_Os05g41380
OsAffx.27274.1.S1_at--351--8371NONE
GGCGTGCTGCTCAACTTATACGTGC
NONE
OsAffx.27274.1.S1_at--374--9111NONE
TGCTGCTCAACTTATACGTGCCGGG
NONE
OsAffx.27274.1.S1_at--376--9691NONE
TCAACTTATACGTGCCGGGCCTGCT
NONE
OsAffx.27274.1.S1_at--305--8431Chr05:24154401..24154425 (25 bp)
GGCCTGCTCACCAGGAGCATGACGA
LOC_Os05g41380
Target Sequence 
GAGTTCGGCCGCGAGCTGTCGTTCAGTGACCTCGTCGTAGTCGAGGACACGGCGAACAACCCCAGCCCGAGAGGAGGCGA
TGGTGGTGGTGACAGGGCAGCTCCGACGGCGGCGGCGGCGGAGAACGGCCAGGCGAGGCCGTCGTCGTCGTCCGAGCAGG
AGGAGGCGGCGGAGGCGGCGTCGAGGCGGCAGCAGCAGCAGCAGGCGGCGGCGGCGGCGAGGGAAAGGAGGCTGCGGAGA
CGGCGGAGCGACAGCAGGGGAAGCTGCGGGGGCAGCGGCGACGGCGTGCTGCTCAACTTATACGTGCCGGGCCTGCTCAC
CAGGAGCATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis