Browse Element(s) Details


Os.24881.1.A1_at

Description gb:CA762938
DB_XREF= gi:25806977
DB_XREF=BR060010A10G06.ab1
CLONE=BR060010A10G06.ab1
TID=Os.24881.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24881 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196233.1 (A.thaliana) mitosis-specific cyclin 1b (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g413907/11G2/mitotic-specific cyclin S13-6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific
LOC_Os05g41360OsAffx.4587.1.S1_at11/115+24143999..24145518expressed protein
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0001558biological_processregulation of cell growth
GO:0007049biological_processcell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24881.1.A1_at--1138--7431Chr05:24159825..24159849 (25 bp)
GTGTACGCGGCTCAATGTACGCTGA
LOC_Os05g41390
Os.24881.1.A1_at--584--2991Chr05:24159838..24159862 (25 bp)
AATGTACGCTGAAGAGGAGTCCCCT
LOC_Os05g41390
Os.24881.1.A1_at--1137--10311Chr05:24159893..24159914 (22 bp)
TTTCACCGAATCACAGCTCAGGGAG
LOC_Os05g41390
Os.24881.1.A1_at--1008--5311NONE
GAAGGTCCTTGTCAGCGCTCATGCT
NONE
Os.24881.1.A1_at--112--951Chr05:24160129..24160153 (25 bp)
AGGAAGTACGCATCCGAGCAGCTTG
LOC_Os05g41390
Os.24881.1.A1_at--322--9171Chr05:24160183..24160207 (25 bp)
TGCCTAGCCTAGGATTAGTACTGTT
LOC_Os05g41390
Os.24881.1.A1_at--823--6971Chr05:24160200..24160224 (25 bp)
GTACTGTTCTGGATTCGGTTTAGAC
LOC_Os05g41390
Os.24881.1.A1_at--343--9771Chr05:24160254..24160278 (25 bp)
TAAGATTCTTTCGTGGGTTTAGCTA
LOC_Os05g41390
Os.24881.1.A1_at--558--5971Chr05:24160297..24160321 (25 bp)
GAGAGCGATTGTTGTTGGGTTTTTT
NONE
Os.24881.1.A1_at--982--10531Chr05:24160358..24160382 (25 bp)
TTCAGTACTGTGATACACCTTGGTG
NONE
Os.24881.1.A1_at--408--2171Chr05:24160372..24160396 (25 bp)
ACACCTTGGTGTAACTACTCTTCAT
NONE
Target Sequence 
GTGTACGCGGCTCAATGTACGCTGAAGAGGAGTCCCCTCTGGACGAGCCCGCTCAAGCACCCCACCGGTTTCACCGAATC
ACAGCTCAGGGAGTGTGCGAAGGTCCTTGTCAGCGCTCATGCTGCCGCTCCTGAGAGCAAGCTGAAGACGGCATACAGGA
AGTACGCATCCGAGCAGCTTGGGCGTGTCTCTCTGCGCCCTCCGGCAGTTTGCCTAGCCTAGGATTAGTACTGTTCTGGA
TTCGGTTTAGACTGTGATGGAATGTCGTTCTTGACAGTATTTAAGATTCTTTCGTGGGTTTAGCTAATTGGATCAAGACA
ACTTGAGAGCGATTGTTGTTGGGTTTTTTGCGGGGTTACTCTGAACTCTCGAGTATACTCATGTATTCAGTACTGTGATA
CACCTTGGTGTAACTACTCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24881.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis